| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,146,060 – 15,146,156 |
| Length | 96 |
| Max. P | 0.739295 |
| Location | 15,146,060 – 15,146,156 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.99 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15146060 96 - 22407834 UGCAGGCAAAUGAACACGUUGAAAUUUUAAUAAGCCAGCCUAAAAGCAGCCA-ACGACAUUUGCCAGCCAAUUUGCAACU-GCUGCAACAGCAGUGGC .((.((((((((....(((((............((..((......)).))))-))).)))))))).))......((.(((-((((...))))))).)) ( -27.00) >DroVir_CAF1 121739 81 - 1 UACUGGCAAAUGAACACGCUGAAAUUUUAAUAAGCCAGCCUAAAAGCAGGCA-ACGGCAUUUGCCAGCCAAUUUGCAACU-GC--------------- ..((((((((((.....(((............)))..((((......)))).-....)))))))))).............-..--------------- ( -22.50) >DroPse_CAF1 110584 85 - 1 UACAGGCAAAUGAACACGUUGAAAUUUUAAUAAGCCAG--------CAACCA-ACGACAUUUGCCAGCCAAUUUGCAACU-G---CAACAGGAGCAGC ....((((((((....(((((.................--------....))-))).)))))))).(((...((((....-)---)))...).))... ( -20.00) >DroGri_CAF1 106553 81 - 1 UACAGGCAAAUGAACACGCUGAAAUUUUAAUAAGCCAACCUAAAAGCAGGCA-AUGCCAUUUGCCAGCCAAUUUGCAACU-GC--------------- ..(((((((((......(((............)))..........((.((((-(......))))).))..))))))..))-).--------------- ( -16.60) >DroWil_CAF1 155930 82 - 1 UACAGGCAAAUGAACACGUUGAAAUUUUAAUAAGGCAGCCUAAAAGCAGGCA-ACGACAUUUGCCAGCCAAUUUGCAACUUGC--------------- .....((((((......(((((....)))))..(((.((......)).((((-(......))))).))).)))))).......--------------- ( -19.00) >DroMoj_CAF1 128923 82 - 1 UACAGGCAAAUGAACACGCUGAAAUUUUAAUAAGCCAGCCUAAAAGCAGGCAAACGCCAUUUGCCAGCCAAUUUGCAACU-GC--------------- ....((((((((.....(((............)))..((((......))))......)))))))).((......))....-..--------------- ( -20.10) >consensus UACAGGCAAAUGAACACGCUGAAAUUUUAAUAAGCCAGCCUAAAAGCAGGCA_ACGACAUUUGCCAGCCAAUUUGCAACU_GC_______________ ....((((((((.....(((............)))..((((......))))......)))))))).((......))...................... (-13.92 = -14.67 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:02 2006