Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,141,856 – 15,141,958 |
Length | 102 |
Max. P | 0.944877 |
Location | 15,141,856 – 15,141,958 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 98.43 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -30.35 |
Energy contribution | -30.75 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.97 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15141856 102 - 22407834 GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA (((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... ( -32.43) >DroSec_CAF1 87063 102 - 1 GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA (((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... ( -32.43) >DroSim_CAF1 86321 102 - 1 GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA (((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... ( -32.43) >DroEre_CAF1 88513 102 - 1 GGCCAGGACUUUUCCUGCGAUUUGCCACCACCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA (((((.........((((((((((.........((((((.((((((............)))))).))))))...))))))))))........)))))..... ( -30.43) >DroYak_CAF1 102526 102 - 1 GGCCAGGACAUUUCCUGCGAUUCGCCACCGCCGCUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA (((((.((((....((((((((.......(((.....)))((((((............))))))............))))))))))))....)))))..... ( -29.50) >consensus GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA (((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... (-30.35 = -30.75 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:57 2006