Locus 5346

Sequence ID 2L_DroMel_CAF1
Location 15,137,638 – 15,137,729
Length 91
Max. P 0.579277
window8492

overview

Window 2

Location 15,137,638 – 15,137,729
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 76.97
Mean single sequence MFE -32.47
Consensus MFE -18.42
Energy contribution -19.70
Covariance contribution 1.28
Combinations/Pair 1.26
Mean z-score -1.57
Structure conservation index 0.57
SVM decision value 0.09
SVM RNA-class probability 0.579277
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15137638 91 + 22407834
CAUAGCGAAGGUCAAAUAGGGGCGUGUGAACUUUGGCCCG--AGCUCAG---------CCGAACUGGCCAUCUGUCCUUGGAUGGUUGUCGAGAUGAGUUCA
....((....))......(((.((.(....)..)).)))(--((((((.---------((((...((((((((......)))))))).))).).))))))). ( -32.30)
>DroSec_CAF1 82859 91 + 1
CAUAGCGAAGGUCAACCAGGGGCGUGUGACUUUUGGUCCG--AGCUCAG---------CCGAACUGGCCAUCUGUCCUUGGAUGGUUGUCGAGAUGAGUUCA
.....(((((((((..(......)..)))))))))....(--((((((.---------((((...((((((((......)))))))).))).).))))))). ( -33.50)
>DroSim_CAF1 82085 91 + 1
CAUAGCGAAGGUCAACCAGGGGCGUGUGACUUUUGGCCCA--AGCUCAG---------CCGAACUGGCCAUCUGUCCUUGGAUGGUUGUCGAGAUGAGUUCA
(((..(((.(..((.(((((((((.(((.((((((((...--......)---------)))))..)).))).))))))))).))..).)))..)))...... ( -32.20)
>DroEre_CAF1 81971 90 + 1
CAUUGCGAAGGUCAAACAGGGGCGUGUGAACUUUGGGCCC--AGCUCAG---------CCGAAAUG-CCAGUUGCCCUUGGAUGGUGGUCGAGAUGAGUUCA
(((..(((..((((..((((((((..((...(((.(((..--......)---------)).)))..-.))..))))))))..))))..)))..)))...... ( -29.20)
>DroWil_CAF1 147005 96 + 1
UGAUGAGAAGGUCAGUUCUGGGACUAUUGCUUUAGGGCUGCGUGCUUGGACAUGUCCAUGGAAUUGAAUAUUUGCCCUUGGCUGACUGUC------AGUUAA
((((..((.((((((((..(((.(((......)))(((.....)))((((....))))................)))..)))))))).))------.)))). ( -25.60)
>DroYak_CAF1 98302 91 + 1
CAUUGCGAAGGUCAUCCAGGGGCGUGUGAACUUUGGGCUG--AGCUCAG---------CCGAACUGGCCAUCUGUCCUUGGAUGGUUGUCGAGAUGAGUUCA
(((..(((.(..((((((((((((.(((..(.((.(((((--....)))---------)).))..)..))).))))))))))))..).)))..)))...... ( -42.00)
>consensus
CAUAGCGAAGGUCAACCAGGGGCGUGUGAACUUUGGGCCG__AGCUCAG_________CCGAACUGGCCAUCUGUCCUUGGAUGGUUGUCGAGAUGAGUUCA
(((..(((..((((.(((((((((.(((...(((((......................))))).....))).))))))))).))))..)))..)))...... (-18.42 = -19.70 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:56 2006