Locus 5345

Sequence ID 2L_DroMel_CAF1
Location 15,136,124 – 15,136,223
Length 99
Max. P 0.537775
window8491

overview

Window 1

Location 15,136,124 – 15,136,223
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.71
Mean single sequence MFE -26.63
Consensus MFE -17.04
Energy contribution -17.80
Covariance contribution 0.76
Combinations/Pair 1.35
Mean z-score -1.45
Structure conservation index 0.64
SVM decision value 0.01
SVM RNA-class probability 0.537775
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15136124 99 - 22407834
AUGCAUCUGCUAUGGCGAUUAGAACGAACGGCACA-UGGAGCAA-AGAAAUAGCUAUA-AACGUGGCUGUGAAAGUAGCAGCCAA--AAUUCAGAUUGCGGCCA
.((((((((...((((..(((......(((((.((-((.(((..-.......)))...-..))))))))).....)))..)))).--....)))).)))).... ( -25.50)
>DroPse_CAF1 99539 92 - 1
AUCCAUCCGCAAUGGCGACUAAAACUACUAGCCAAAAGGAGCUGGAGGAGGAGUUCCACGACGG------------GGCAGCCUAGGGAUUCAGGAUGCAGAAA
((((((((.(...(((..((....((.(((((........))))))).))..(((((.....))------------))).)))..)))))...))))....... ( -24.40)
>DroSec_CAF1 81404 99 - 1
AUGCAUCUGCAAUGGCGAUUAGAACGAACGGCCCA-UGGAGCAA-AGAAAUAGCCAUA-AACGUGGCUGUAAAAGUAGCAGCCAA--AAUUCAGAUUGCGGCCA
.((((((((..(((((........(....)(((..-..).))..-.......))))).-....(((((((.......))))))).--....)))).)))).... ( -25.70)
>DroSim_CAF1 80677 99 - 1
AUGCAUCUGCAAUGGCGAUUAGAACGAACGGCCCA-UGGAGCAA-AGAAAUAGCCAUA-AACGUGGCUGUGAAAGUAGCAGCCAA--AAUUCAGAUUGCGGCCA
.((((((((..(((((........(....)(((..-..).))..-.......))))).-....(((((((.......))))))).--....)))).)))).... ( -26.00)
>DroEre_CAF1 80495 99 - 1
AUGCAUCUGCAAUGGCGAUUAGAACGAACGGCCCA-UGGAGCCA-GGGAAUAGCUAUA-AACGGGGCUGUGAAAGUAGUGGCCAA--AAUUCAGAUUGCGGCCA
.((((((((...((((.((((......(((((((.-...(((..-.......)))...-....))))))).....)))).)))).--....)))).)))).... ( -30.30)
>DroYak_CAF1 96847 100 - 1
AUGCAUCUGCAAUGGCGAUUAGAACGAACGGCCCC-UGGAGCAAAAGGAAUGGCUAUA-AACGGGGCUAUGAAAGUAGCAGCCAA--AAUUCAGAUUGCGGCCA
.((((((((...((((.............((((((-(........)))...))))...-......(((((....))))).)))).--....)))).)))).... ( -27.90)
>consensus
AUGCAUCUGCAAUGGCGAUUAGAACGAACGGCCCA_UGGAGCAA_AGAAAUAGCUAUA_AACGGGGCUGUGAAAGUAGCAGCCAA__AAUUCAGAUUGCGGCCA
......((((((((((..............)))...(((.((.......((((((((.....)))))))).......))..)))..........)))))))... (-17.04 = -17.80 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:55 2006