Locus 5344

Sequence ID 2L_DroMel_CAF1
Location 15,133,029 – 15,133,122
Length 93
Max. P 0.804776
window8489 window8490

overview

Window 9

Location 15,133,029 – 15,133,122
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 90.75
Mean single sequence MFE -29.73
Consensus MFE -24.16
Energy contribution -24.97
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -1.98
Structure conservation index 0.81
SVM decision value 0.03
SVM RNA-class probability 0.548022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15133029 93 + 22407834
CAGGACAACUAAGCCCCGAAUGGAGGGGCUUGUGGUGGAGCAUAUAUCCUCCUGAUGAGCUCAAUGGUUUAAUGCAUUUGAAUAUAUGCAUGU
(((((....((((((((.......))))))))....(((.......)))))))).((((((....))))))((((((........)))))).. ( -30.40)
>DroSec_CAF1 78266 93 + 1
CAGGACAACUAAGCCCCGAAUGGAGGGGCCUGUGGUGGAGCAUGUUUCCUCCUGAUGAGCUCAAUGGCUUAAUGCAUUUGAAUAUAUGCAUGU
(((((..((((.(((((.......)))))...))))((((.....))))))))).((((((....))))))((((((........)))))).. ( -32.10)
>DroSim_CAF1 77471 93 + 1
CAGGACAACUAAGCCCCGAAUGGAGGGGCCUGUGGUGGAGCAUGUUUCCUCCUGAUGAGCUCAAUGGUUUAAUGCAUUUGAAUAUAUGCAUGU
(((((..((((.(((((.......)))))...))))((((.....))))))))).((((((....))))))((((((........)))))).. ( -29.70)
>DroEre_CAF1 77343 93 + 1
CAGGACAACUAAGCUCAGAAUGGAGGGGCCCGUGGUGGGGCAUGUAUCCUCCUGAUGAGCUCAAUGGUUUAAUGCAUUUGAAUAUAUGCAUGU
..((((.....((((((....((((((((((......)))).....))))))...)))))).....)))).((((((........)))))).. ( -32.70)
>DroYak_CAF1 93635 92 + 1
CAGGACAACUAAGCCCCGAAUGGAGGGGC-UGUGGUGGAGCAUGUUUCCUCCUGAUGAGCUCAAUGGUUUAAUGCAUUUGAAUAUAUGCAUAU
(((((..((((((((((.......)))))-).))))((((.....))))))))).((((((....))))))((((((........)))))).. ( -31.20)
>DroAna_CAF1 84281 92 + 1
GAGGACGACUAAGCC-CGACUCGAGUGGCGUAUAGUGGCGGAAGCUUCCUGCUGAUGAGCUCAAUGGUUUAAUGCAUUUGAAUAUAUGCAGGA
.((((..((((.(((-(.((....)))).)).))))(((....))))))).....((((((....)))))).(((((........)))))... ( -22.30)
>consensus
CAGGACAACUAAGCCCCGAAUGGAGGGGCCUGUGGUGGAGCAUGUUUCCUCCUGAUGAGCUCAAUGGUUUAAUGCAUUUGAAUAUAUGCAUGU
(((((..((((.(((((.......)))))...))))((((.....))))))))).((((((....))))))((((((........)))))).. (-24.16 = -24.97 +   0.81)

alignment

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secondary structure

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dotplot

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Window 0

Location 15,133,029 – 15,133,122
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 90.75
Mean single sequence MFE -24.60
Consensus MFE -20.32
Energy contribution -20.82
Covariance contribution 0.50
Combinations/Pair 1.20
Mean z-score -2.26
Structure conservation index 0.83
SVM decision value 0.63
SVM RNA-class probability 0.804776
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15133029 93 - 22407834
ACAUGCAUAUAUUCAAAUGCAUUAAACCAUUGAGCUCAUCAGGAGGAUAUAUGCUCCACCACAAGCCCCUCCAUUCGGGGCUUAGUUGUCCUG
....((((((((((....((.((((....))))))((.....))))))))))))...((.(((((((((.......))))))).)).)).... ( -25.40)
>DroSec_CAF1 78266 93 - 1
ACAUGCAUAUAUUCAAAUGCAUUAAGCCAUUGAGCUCAUCAGGAGGAAACAUGCUCCACCACAGGCCCCUCCAUUCGGGGCUUAGUUGUCCUG
..((((((........))))))..(((......)))...((((((((.......))).....(((((((.......))))))).....))))) ( -25.70)
>DroSim_CAF1 77471 93 - 1
ACAUGCAUAUAUUCAAAUGCAUUAAACCAUUGAGCUCAUCAGGAGGAAACAUGCUCCACCACAGGCCCCUCCAUUCGGGGCUUAGUUGUCCUG
..((((((........)))))).................((((((((.......))).....(((((((.......))))))).....))))) ( -24.70)
>DroEre_CAF1 77343 93 - 1
ACAUGCAUAUAUUCAAAUGCAUUAAACCAUUGAGCUCAUCAGGAGGAUACAUGCCCCACCACGGGCCCCUCCAUUCUGAGCUUAGUUGUCCUG
..((((((........))))))...((.((((((((((...(((((......((((......)))).)))))....)))))))))).)).... ( -30.50)
>DroYak_CAF1 93635 92 - 1
AUAUGCAUAUAUUCAAAUGCAUUAAACCAUUGAGCUCAUCAGGAGGAAACAUGCUCCACCACA-GCCCCUCCAUUCGGGGCUUAGUUGUCCUG
..((((((........)))))).................((((((((.......))).....(-(((((.......))))))......))))) ( -23.40)
>DroAna_CAF1 84281 92 - 1
UCCUGCAUAUAUUCAAAUGCAUUAAACCAUUGAGCUCAUCAGCAGGAAGCUUCCGCCACUAUACGCCACUCGAGUCG-GGCUUAGUCGUCCUC
...(((((........)))))....((.(((((((((....((.(((....))))).......((.....))....)-)))))))).)).... ( -17.90)
>consensus
ACAUGCAUAUAUUCAAAUGCAUUAAACCAUUGAGCUCAUCAGGAGGAAACAUGCUCCACCACAGGCCCCUCCAUUCGGGGCUUAGUUGUCCUG
..((((((........))))))...((.(((((((((....(((((......(((........))).))))).....))))))))).)).... (-20.32 = -20.82 +   0.50)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006