Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,131,227 – 15,131,325 |
Length | 98 |
Max. P | 0.528794 |
Location | 15,131,227 – 15,131,325 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -17.64 |
Energy contribution | -18.45 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.20 |
Mean z-score | -1.51 |
Structure conservation index | 0.67 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15131227 98 - 22407834 -----GAAGCCUGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACAAAAGUUACGCAUGAAAGAACUGA -----.....(((....)))((((......(((((.(((((..((...(((.....)))...)))))))..)))))(((....)))..))))........... ( -27.40) >DroGri_CAF1 90589 88 - 1 ACACACACACCCAGUAAGA----CGUACACUGGGCUGCCAC-----------ACAUGCUUAAGCGUAGCUUGUACAAACAAAACUUACGCAUGGAAAACGCUG .......((((((((....----.....)))))).))....-----------.(((((.((((......((((....))))..)))).))))).......... ( -17.10) >DroSec_CAF1 76494 98 - 1 -----GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACGAAAGUUACGCAUGAAAGAACUGA -----.....(((....)))((((......(((((.(((((..((...(((.....)))...)))))))..)))))(((....)))..))))........... ( -33.30) >DroSim_CAF1 75687 98 - 1 -----GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACAAAACUUACGCAUGAAAGAACUGA -----..((((((....)))..))).....(((((.(((((..((...(((.....)))...)))))))..)))))........................... ( -27.80) >DroEre_CAF1 75632 98 - 1 -----GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGUCAAACAAAAGUUACGCAUGAAAGAUCUGA -----.(((((((....)))...........(((.(((.....)))..))).....))))..(((((((((..........)))))))))............. ( -26.70) >DroYak_CAF1 91896 97 - 1 -----GAAGC-CGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGAAAACAAAAGUUACGCAUGGAAGAUCUGA -----....(-((....)))((((....(((.(((.(((((..((...(((.....)))...)))))))..)))........)))...))))........... ( -24.90) >consensus _____GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACAAAAGUUACGCAUGAAAGAACUGA .......((((((....)))..))).....(((((.(((((..((....)).....((....)))))))..)))))........................... (-17.64 = -18.45 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:52 2006