Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,672,593 – 1,672,712 |
Length | 119 |
Max. P | 0.521634 |
Location | 1,672,593 – 1,672,712 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -21.62 |
Consensus MFE | -18.72 |
Energy contribution | -18.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.01 |
Structure conservation index | 0.87 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1672593 119 - 22407834 AGUCCCUUUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAGCGCACAGGCGCAGUGUCCUGCCGCUCCCCACCAUUCCCCCCCCUCACAA .((.(((((((((((.(((((......))))).........))))....((((.......)))))))))).).)).(((((((....))).))))........................ ( -21.50) >DroSim_CAF1 1 96 - 1 ---CCCUUUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAGCGCACAGGCGCAGUGUCCUGCACCUGCCC-------------------- ---..((((((((((.(((((......))))).........))))....((((.......))))))))))....((((.((((....)))).))))...-------------------- ( -24.50) >DroYak_CAF1 1 99 - 1 AAUCGCUCUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAACGCACAGGCGCAGUAUCCUGCCCCUCCCC-------------------- .................(((((((((((.((...((.....))......((((..................))))..))))))))).))))........-------------------- ( -18.87) >consensus A_UCCCUUUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAGCGCACAGGCGCAGUGUCCUGCCCCUCCCC____________________ .................(((((((((((.((...((.....))......((((..................))))..))))))))).))))............................ (-18.72 = -18.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:31 2006