Locus 5339

Sequence ID 2L_DroMel_CAF1
Location 15,120,598 – 15,120,693
Length 95
Max. P 0.582547
window8479

overview

Window 9

Location 15,120,598 – 15,120,693
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -34.02
Consensus MFE -22.08
Energy contribution -22.05
Covariance contribution -0.03
Combinations/Pair 1.08
Mean z-score -2.45
Structure conservation index 0.65
SVM decision value 0.10
SVM RNA-class probability 0.582547
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15120598 95 - 22407834
-CCCGA---------UGCCUUUAU------AUU--UCUGUUUUGUGUUUACAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGC-------UCCUGGGCAGGACAG
-.((..---------((((((...------(((--((..(((((((....)))))))..)))))))))))...(((.(..((((((........))))-------))..).))))).... ( -33.40)
>DroVir_CAF1 91336 94 - 1
-CUUUA---------UGCCUUUAU------AU---UCUGUUUUGUGUUUACAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGC-------UUCUGGGCAGGGAUA
-.....---------((((((...------.(---((..(((((((....)))))))..)))..))))))..((((.(..((((((........))))-------))..).))))..... ( -30.00)
>DroPse_CAF1 82147 102 - 1
GCUCUG---------UGCCUUUAUGCUCGUAUU--UCUGUUUUGUGUUUGCAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGC-------UCCUGGGCAGGGCAG
(((((.---------.((.....((((..((((--((..(((((((....)))))))..)))))).))))....))((((((((((........))))-------))..))))))))).. ( -37.00)
>DroGri_CAF1 81416 94 - 1
-CUUUA---------UGCCUUUAU------AU---UCUGUUUUGUGUUUACAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGC-------UUCUGGGCAGGGAUA
-.....---------((((((...------.(---((..(((((((....)))))))..)))..))))))..((((.(..((((((........))))-------))..).))))..... ( -30.00)
>DroWil_CAF1 126499 113 - 1
-CUCUGUGCUUUUGCUGUCUCUAU------UUUAUUCUGUUUUGUGUUUACAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGACUCGUCGUCCUGGGAAGGGAGG
-(((.((((.....(((((((.((------(((((....(((((((....)))))))))))))))))))))...)))).(((((.((((....)))))))))....(((....)))))). ( -36.70)
>DroPer_CAF1 83267 102 - 1
GCUCUG---------UGCCUUUAUGCUCGUAUU--UCUGUUUUGUGUUUGCAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGC-------UCCUGGGCAGGGCAG
(((((.---------.((.....((((..((((--((..(((((((....)))))))..)))))).))))....))((((((((((........))))-------))..))))))))).. ( -37.00)
>consensus
_CUCUA_________UGCCUUUAU______AUU__UCUGUUUUGUGUUUACAUAAAAGUGAAGUGAGGCAGAUUGCGCUCGAGUGCGUUAAUCAGCGC_______UCCUGGGCAGGGAAG
...............(((((...............(((((((..(.(((((......))))))..)))))))..(((((.((.........)))))))...........)))))...... (-22.08 = -22.05 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:44 2006