| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,117,126 – 15,117,237 |
| Length | 111 |
| Max. P | 0.787049 |
| Location | 15,117,126 – 15,117,237 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -12.85 |
| Energy contribution | -12.60 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.787049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15117126 111 + 22407834 ---GUAACCCCACCUUAGACUCCCUUCCGCC------AUCCAACUAAAUGCAUUUCGGUUUUUAUUCAUAUUUUAUUCAAAUGUGGCGACCAAAAUGGCACAAACACAGCGCAGUUAUUU ---(((((.......................------.............(((((.((((.....((((((((.....)))))))).)))).)))))((.(.......).)).))))).. ( -13.10) >DroVir_CAF1 87262 103 + 1 UUUUC---GCCUGCUGGC-------CCCGUC------GCCCAACUAAAUGCAUUUCGGUU-UUAUUCAUAUUUUAUUCAAAUGUGGCAACCAAAAUGGCACAAACACUGCGCAGUUAUUU .....---..((((.(((-------......------)))..........(((((.((((-....((((((((.....)))))))).)))).)))))(((.......)))))))...... ( -20.00) >DroGri_CAF1 78070 107 + 1 CCCUCAAUCCCUUCUUGG-------UCUUUU------UCCCAACUAAAUGCAUUUCGGUUUUUAUUCAUAUUUUAUUCAAAUGUGGCAACCAAAAUGGCACAAACACUGCAAAGUUAUUU .........((.....))-------......------....((((.....(((((.((((.....((((((((.....)))))))).)))).)))))(((.......)))..)))).... ( -13.50) >DroWil_CAF1 122129 110 + 1 ---AGGA------CCUGGGUUCCUUCUCGCCCAGAACCUCCAACUAAAUGCAUUUCGGUU-UUAUUCAUAUUUUAUUCAAAUGUGGCAACCAAAAUGGCACAAACACUGCGCAGUUAUUU ---(((.------.((((((........))))))..)))..((((.....(((((.((((-....((((((((.....)))))))).)))).)))))((.((.....)).)))))).... ( -26.20) >DroMoj_CAF1 86852 91 + 1 UU--U---G-----------------CCGCC------UUCCAGCUAAAUGCAUUUCGGUU-UUAUUCAUAUUUUAUUCAAAUGUGGCAACCAAAAUGGCACAAACACUGUGCAGUUAUAU ..--.---.-----------------.....------....((((.....(((((.((((-....((((((((.....)))))))).)))).)))))(((((.....))))))))).... ( -18.50) >DroPer_CAF1 78570 106 + 1 --------UAUACCCUAUUCCUCACUCUGCC------ACCCAACUAAAUGCAUUUCGGUUUUUAUUCAUAUUUUAUUCAAAUGUGGCAACCAAAAUGGCACAAACACUGCGCAGUUAUUU --------..................((((.------.............(((((.((((.....((((((((.....)))))))).)))).)))))(((.......)))))))...... ( -16.10) >consensus ____C___CCC__CUUGG_______UCCGCC______ACCCAACUAAAUGCAUUUCGGUU_UUAUUCAUAUUUUAUUCAAAUGUGGCAACCAAAAUGGCACAAACACUGCGCAGUUAUUU .........................................((((.....(((((.((((.....((((((((.....)))))))).)))).)))))(((.......)))..)))).... (-12.85 = -12.60 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:40 2006