Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,109,944 – 15,110,037 |
Length | 93 |
Max. P | 0.521902 |
Location | 15,109,944 – 15,110,037 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.05 |
Mean single sequence MFE | -24.37 |
Consensus MFE | -18.78 |
Energy contribution | -19.42 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.77 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15109944 93 + 22407834 CACAGCAACAACAAUUACGUGAACUUCAAUCAGUUCAUUAUGCAGCACAAUCUGGGUGGAGGAGCGCCCUCGAAUGCCAC------------CAGCACUAUGCAA ....(((...........(((((((......)))))))..(((..((.....))(((((..(((....))).....))))------------).)))...))).. ( -20.00) >DroSec_CAF1 54097 93 + 1 CAGGGCAACAACAAUUACGUGAACUUCAAUCAGUUCAUUAUGCAGCACAAUCUGGGUGGAGGAGCGCCCUCCAAUGCCGC------------CAGCACUAUGCAA ...(((............(((((((......)))))))...............((.((((((.....))))))...))))------------).((.....)).. ( -24.80) >DroSim_CAF1 51795 93 + 1 CAGGGCAACAACAAUUACGUGAACUUCAAUCAGUUCAUUAUGCAGCACAAUCUGGGUGGAGGAGCACCCUCCAAUGCCAC------------CAGCACUAUGCAA ...(....).........(((((((......)))))))..((((.......((((.((((((.....))))))......)------------))).....)))). ( -25.00) >DroEre_CAF1 55713 93 + 1 CAUGGCAACAACAAUUACGUGAACUUCAAUCAGUUUAUAAUGCAGCACAAUCUGGGUGGUGGAGCGCCCACCAAUGCCAC------------AAGCACUAUGCAA ..(((((...........(((((((......))))))).((.(((......))).))(((((.....)))))..))))).------------..((.....)).. ( -23.10) >DroYak_CAF1 69472 93 + 1 CACGGCAACAACAAUUACGUGAACUUUAAUCAGUUCAUCAUGCAGCACAAUCUGGGUGGAGGACCGCCCUCCAAUGCCAC------------UGGCACUAUGCAA ...(....).........(((((((......)))))))..((((.........((((((....)))))).....((((..------------.))))...)))). ( -25.10) >DroAna_CAF1 59784 102 + 1 GGCGGCAACAACAACUAUGUGAACUUCAACCAGUUCAUCAUGCAGCUGAACCUCGGAGGAGGUGC---CCCCAAUGCCGCAAACUCAAGCUCCAGCUACAUGCAA .((((((........((((((((((......)))))).))))..((...(((((....)))))))---......)))))).......(((....)))........ ( -28.20) >consensus CACGGCAACAACAAUUACGUGAACUUCAAUCAGUUCAUUAUGCAGCACAAUCUGGGUGGAGGAGCGCCCUCCAAUGCCAC____________CAGCACUAUGCAA ...((((...........(((((((......))))))).((.(((......))).))(((((.....)))))..))))................((.....)).. (-18.78 = -19.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:39 2006