Locus 5335

Sequence ID 2L_DroMel_CAF1
Location 15,105,790 – 15,105,900
Length 110
Max. P 0.679650
window8473

overview

Window 3

Location 15,105,790 – 15,105,900
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.30
Mean single sequence MFE -45.04
Consensus MFE -29.52
Energy contribution -29.22
Covariance contribution -0.30
Combinations/Pair 1.46
Mean z-score -2.03
Structure conservation index 0.66
SVM decision value 0.30
SVM RNA-class probability 0.679650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15105790 110 - 22407834
AGUACUCAAGCCGGCAGCCGCUGCAGCAGCCGCAUAGGCGGGCAGUAAGUGCGGGAAGAAUUGGGCAUAGAACUUGGUGGCAUUGGCCAUGGCCACCAAAUCUGGCGGCA
.........((((.(((((((....))..((((((..((.....))..)))))).........))).......((((((((..........))))))))...)).)))). ( -42.30)
>DroVir_CAF1 74617 110 - 1
CGUGGUCAGACCGGCGGCAGCUGCAGCCGCUGCAUAGGCGGGCAGCAAAUGUGGAAAGAAUUGCGCAUAGAAUUUGGUUGCACUGGCCAUGGCCAGCAAAUCCGGCGGCA
(((((((((....(((((.(((((..(((((.....))))))))))..(((((.((....)).)))))........))))).)))))))))(((.((.......))))). ( -47.00)
>DroPse_CAF1 65990 110 - 1
AGUGCUGAGGCCGGCAGCCGCCGCUGCAGCGGCAUAGGCGGGCAGCAAAUGUGGAAAGAACUGGGCAUAGAAUUUGGUGGCAUUCGCCAUAGCCACCAGAUCCGGAGGCA
.(((((.(((((.((....(((((....)))))....)).))).((....))........)).))))).(.((((((((((..........)))))))))).)....... ( -44.20)
>DroGri_CAF1 64721 110 - 1
CGUUGUGAAGCCGGCGGCAGCUGCUGCUGCCGCAUAGGCAGGCAGCAAGUGUGGAAAGAACUGUGCAUAGAAUUUGGUUGCACUGGCCAUGGCCAGCAAAUCCGGUGGCA
.........((((.(((((((((((((((((.....)))).)))))..(((..(......)..))).........)))))).(((((....)))))......)).)))). ( -47.00)
>DroMoj_CAF1 73214 110 - 1
CGUUGUCAGCCCGGCGGCAGCUGCUGCCGCUGCAUAGGCGGGCAGCAAAUGUGGAAAGAAUUGUGCAUAGAACUUGGUCGCACUGGCCAUGGCCAACAGAUCCGGCGGCA
.((((((.((((((((((....))))))(((.....))))))).........(((.......((((.............))))((((....)))).....))))))))). ( -45.12)
>DroAna_CAF1 53665 110 - 1
AGUACUGAGGCCAGCCGCCGCAGCAGCUGCCGCGUAGGCAGGUAAAAGGUGUGGAAAGAAUUGGGCAUAAAACUUUGUGGCGUUGGCCAUGGCUACCAGAUCCGGUGGCA
........(((((((.(((((.....(((((.....)))))...((((.((((............))))...))))))))))))))))...((((((......)))))). ( -44.60)
>consensus
AGUACUCAGGCCGGCGGCAGCUGCAGCAGCCGCAUAGGCGGGCAGCAAAUGUGGAAAGAAUUGGGCAUAGAACUUGGUGGCACUGGCCAUGGCCACCAAAUCCGGCGGCA
.........((((.((((((((((.((((((.....)))).)).))..((((............)))).......))))))..((((....)))).......)).)))). (-29.52 = -29.22 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006