| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,100,700 – 15,100,818 |
| Length | 118 |
| Max. P | 0.610019 |
| Location | 15,100,700 – 15,100,818 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.80 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.95 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15100700 118 + 22407834 AAAAGGCAUGGCCCGGUAUGACAACUUCCUGAUGGAUGGAAAUUUGAGAGCUAUAAAUCGCGAUUGAAAUGCUCGUUCAUCUUAUCGCGAUUGAAUCGAGCACCACCCAAAUAGUUG-C ....(((...)))........(((((......(((.(((...((..(..((........))..)..)).((((((((((((.......)).)))).))))))))).)))...)))))-. ( -27.80) >DroPse_CAF1 59782 94 + 1 -----------------------ACCUCCUGAUGGAUGGCAAUUCGAAAGCAAUAAAUCGCCUUUGAAAUGCUCGUUCAUCUUAUCGCGAUGGAG-UGACCGCCACCCAAAUAGUUU-C -----------------------.......(((((((((((.((((((.((........)).)))))).))).)))))))).........(((.(-((.....))))))........-. ( -26.50) >DroEre_CAF1 46418 108 + 1 AGAAGG----------AAUGACAACUUCCUGAUGAAUGGCAAUUUGUGAGCUAUAAAUCGCGAUUGAAAUGCUCGUUUAUCUUAUCGCGAUUGAGCCGAGCACCACCCAAAUAGUUU-C ...(((----------((.......)))))......(((.....(((..(((...(((((((((..((((....)))).....))))))))).)))...)))....)))........-. ( -23.90) >DroWil_CAF1 98038 94 + 1 -----------------CUGACGACUUCCUGAUGUAUGGCAUUUCGAAAUCCAUAAAUCGCCG-UGAAAUGCCCAUCCAUUUUAUCGUGAUUGAA-------CCACCCAAAUAGUUUGC -----------------..(((((.(((..((((.....))))..))).))....((((((.(-(((((((......)))))))).))))))...-------...........)))... ( -17.10) >DroAna_CAF1 47996 101 + 1 ----------------ACAGAUAACUUCCUGAUGAAUGGCAAUUCAAAGGCAAUAAAUCGCGUUUGAAAUGCUCGUUCAUCUUAUCGCGAUUGGA-CGAGCACCACCCAAAUAGUUU-U ----------------.(((........))).((..(((...((((((.((........)).)))))).((((((((((((.......)).))))-)))))))))..))........-. ( -27.60) >DroPer_CAF1 59928 94 + 1 -----------------------ACUUCCUGAUGGAUGGCAAUUCGAAAGCAAUAAAUCGCCUUUGAAAUGCUCGUUCAUCUUAUCGCGAUGGAG-UGACCGCCACCCAAAUAGUUU-C -----------------------.......(((((((((((.((((((.((........)).)))))).))).)))))))).........(((.(-((.....))))))........-. ( -26.50) >consensus __________________UGACAACUUCCUGAUGGAUGGCAAUUCGAAAGCAAUAAAUCGCCUUUGAAAUGCUCGUUCAUCUUAUCGCGAUUGAA_CGAGCACCACCCAAAUAGUUU_C ..............................(((((((((((.(((((..((........))..))))).))).))))))))...................................... (-15.06 = -14.95 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006