Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,087,828 – 15,087,947 |
Length | 119 |
Max. P | 0.940282 |
Location | 15,087,828 – 15,087,947 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 76.46 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -18.04 |
Energy contribution | -17.35 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.19 |
Mean z-score | -2.08 |
Structure conservation index | 0.58 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15087828 119 - 22407834 UCCCUUUUCUAUAUAACCAGAGAACCACUCUGUGCACAGAACUCACCUCCAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAACCUGGCCAUAGCCUCGACACCUGUCCAGAG ....((((((........))))))...(((((.(((((((....(((.....)))..((((((...))))))))))))).(((((((....)))))))......(((....)))))))) ( -31.80) >DroPse_CAF1 45989 111 - 1 --------UCUGAAAUGCAUAGGCACACUCCAUUAAUAUUACUCACUUCGAGGGUAACAAUCAGUAUAAUUGUCUGAGCUGUGGUUAAUCCUGGCCAUAGCCUCGACACCUGACCAGAG --------((((..((((...((......)).......((((((.......))))))......))))...((((.((((((((((((....))))))))).)))))))......)))). ( -28.70) >DroSec_CAF1 32346 117 - 1 UCCCUU--CCAGAUAACCAGAAAUCCACUCUGUGCACAGAACUCACCUCCAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAUCCUGGCCAUAGCCUCGACACCUGUCCAGAG ......--...................(((((.(((((((....(((.....)))..((((((...))))))))))))).(((((((....)))))))......(((....)))))))) ( -29.70) >DroEre_CAF1 33104 97 - 1 UCCCCU----------------------UCCAGGGACAGAACUCACCUCUAGGGUAACAAUUAGAAUAAUUGUCUGGGCCGUGGUCAAUCCAGGCCACAGCCGCGACACCUGUCCAGAA ......----------------------.....((((((.....(((.....)))...............((((..(((.((((((......)))))).)))..)))).)))))).... ( -32.00) >DroYak_CAF1 40219 117 - 1 UCCCAU--CCAGAUAAUUAGAAGUGCACUCCGUGCACAAAACUCACCUCUAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAUCCUGGCCAUAGCCUCGACACCUGUCCAGAG ......--.((((((((((...((((((...)))))).......(((.....)))...........)))))))))).((..((((((....))))))..))((.(((....))).)).. ( -34.80) >DroPer_CAF1 46143 111 - 1 --------UCUGAAAUGCAUAGGCGUACUCCAUUAAUAUUACUCACUUCGAGGGUAACAAUCAGUAUAAUUGUCUGAGCUGUGGUUAGUCCUGGCCAUAGCCUCGACACCUGACCAGAG --------((((..((((....))))............((((((.......))))))...((((......((((.((((((((((((....))))))))).))))))).)))).)))). ( -30.10) >consensus UCCC_U__CCAGAUAACCAGAGGCCCACUCCAUGCACAGAACUCACCUCCAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAUCCUGGCCAUAGCCUCGACACCUGUCCAGAG .........................................((((((.....)))........((.....((((...((.(((((((....))))))).))...))))....))..))) (-18.04 = -17.35 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:32 2006