Locus 5330

Sequence ID	2L_DroMel_CAF1
Location	15,087,327 – 15,087,436
Length	109
Max. P	0.796563

overview

Window 6

Location	15,087,327 – 15,087,436
Length	109
Sequences	6
Columns	117
Reading direction	forward
Mean pairwise identity	77.55
Mean single sequence MFE	-44.58
Consensus MFE	-22.57
Energy contribution	-23.30
Covariance contribution	0.73
Combinations/Pair	1.35
Mean z-score	-2.09
Structure conservation index	0.51
SVM decision value	0.60
SVM RNA-class probability	0.796563
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15087327 109 + 22407834
UAUGUGGGGUGCUCUUAGCCCUACCCAAAAUGUGACCCGCAGUCUAGCCGAGGAACUGGCCACUGCAGAAGCGGAACUAAAGGCGGAGUCCACUGGUACGCCCACCAA---A-----
...(((((((.......)))))))......((.(((((((......((((......))))..((((....))))........)))).))))).((((......)))).---.----- ( -33.80)
>DroVir_CAF1 46540 117 + 1
UAUGUGGGGCGCUCUCAGUCCCACGCAGCAUGUGAAUCGCAGUCUAGCCGAGGAAUUGGCCACCGCCGAGGAGAAGCUUAAGUCUGAGGCAGCUGCCACGCCCAAAACUGUGGCACA
...(((((((.......)))))))(((((.((((...)))).....(((..(((...(((..((.....))....)))....)))..))).)))))...(((((....)).)))... ( -41.60)
>DroPse_CAF1 45484 109 + 1
CAUGUGGGGUGCCUUGAGUCCCACGCAGAAUGUGACACGGAGUCUGGCCGAGGAAUUGGCCACAGCCGAGGCCGAGCUUAAGGCCGAGGCAGCUGGCACGCCCACAAA---A-----
..(((((((((((..((.(((..(((.....)))....))).))(((((((....)))))))..(((..((((........))))..)))....))))).))))))..---.----- ( -53.40)
>DroWil_CAF1 69446 103 + 1
UAUGUGGGGUGCAUUGAGUCCCACACAGAAUGUAACCCGCAGUCUGGCCGAGGAAUUGGCCACCGCCGAGGAGCAGUUAAAGGCCGAAGCAGCAGCUGCUC-CA-------------
..((((((.((((((..((.....))..)))))).))))))...(((((((....))))))).......(((((((((....((....))...))))))))-).------------- ( -42.30)
>DroAna_CAF1 34499 109 + 1
UAUGUGGGGAGCUCUGAGCCCCACCCAAAAUGUGACACGCAGCCUGGCCGAAGAACUGGCCACUGCCGAGGCCGAGCUGAAGGCGGAGGGAUCCGGCACGCCCACUAA---A-----
...(((((.(((((.(.(((.(((.......)))....((((..((((((......))))))))))...)))))))))...(.((((....)))).)...)))))...---.----- ( -43.00)
>DroPer_CAF1 45638 109 + 1
CAUGUGGGGUGCCUUGAGUCCCACGCAGAAUGUGACACGGAGUCUGGCCGAGGAAUUGGCCACAGCCGAGGCCGAGCUUAAGGCCGAGGCAGCUGGCACGCCCACAAA---A-----
..(((((((((((..((.(((..(((.....)))....))).))(((((((....)))))))..(((..((((........))))..)))....))))).))))))..---.----- ( -53.40)
>consensus
UAUGUGGGGUGCUCUGAGUCCCACGCAGAAUGUGACACGCAGUCUGGCCGAGGAAUUGGCCACAGCCGAGGCCGAGCUUAAGGCCGAGGCAGCUGGCACGCCCACAAA___A_____
...(((((((.......))))))).......(((..........(((((((....)))))))..(((..(((..........)))..)))......))).................. (-22.57 = -23.30 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:31 2006