Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,082,948 – 15,083,043 |
Length | 95 |
Max. P | 0.538262 |
Location | 15,082,948 – 15,083,043 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.11 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -18.69 |
Energy contribution | -19.33 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -1.19 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15082948 95 - 22407834 UUUUAUUGAGCCAAAGGCGACGAGGAGUCAUCAAAUGACCUGCGUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGGAAA--AAAGUA-AGGCA-------------AA .....(((.(((....(((....((.(((((...))))))).)))..))).((((((.......(..((.....))..)...--...)))-)))))-------------). ( -23.42) >DroVir_CAF1 39466 93 - 1 UUUUGUUGAGCCAAAGGCGACGCGGGGUCAUUAAAUGGCCGGCAUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGCAA---A-A---------GAAAUU-----UAAA ((((((...(((((..(((.(((((((((((...)))))).((.....))...))))).)))..)))))((....))))))---)-)---------......-----.... ( -28.80) >DroPse_CAF1 39407 96 - 1 UUUUAUUCAGCCAGAGCCGGCGCGGCGUCAUCAAAUGACCAGCGUACGGCACUUUGCGGCGUAUAUGGCGGGAAGCUGCAAGAAAGCGUA-AAA-A-------------AA ((((((.(.(((((.((((((((.(.(((((...)))))).)))).)))).))....))).......((((....))))......).)))-)))-.-------------.. ( -29.80) >DroMoj_CAF1 35097 106 - 1 UUUUGUUGAGCCAGAGGCGACGCGGCGUCAUCAAAUGGCCAGCGUAUGGCACUUUACGGCGUAAUUGGCGGGAAGCUGCAA---U-AUUA-AAACAGAGAUUAGAUGAAAA (((((((..(((((((((.(((((((...........))).))))...)).))))..))).((((..((((....))))..---.-))))-.)))))))............ ( -28.90) >DroAna_CAF1 29388 95 - 1 UUUUAUUGAGCCAGAGGCGUCGCGGCGUCAUCAGAUGGCCGGCGUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGGAA---AAUUCAAAAGGA-------------AA ((((.(((((((((..(((((((((((((....))))(((.......)))...)))))))))..)))))((....))....---...)))).))))-------------.. ( -31.90) >DroPer_CAF1 39616 96 - 1 UUUUAUUCAGCCAGAGCCGGCGCGGCGUCAUCAAAUGACCAGCGUACGGCACUUUGCGGCGUAUAUGGCGGGAAGCUGCAAGAAAGCGUA-AAA-A-------------AA ((((((.(.(((((.((((((((.(.(((((...)))))).)))).)))).))....))).......((((....))))......).)))-)))-.-------------.. ( -29.80) >consensus UUUUAUUGAGCCAGAGGCGACGCGGCGUCAUCAAAUGACCAGCGUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGCAA___A_AGUA_AAA_A_____________AA .........(((((..(((.(((((.(((((...)))))..((.....))...))))).)))..))))).......................................... (-18.69 = -19.33 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:30 2006