Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,078,663 – 15,078,755 |
Length | 92 |
Max. P | 0.722380 |
Location | 15,078,663 – 15,078,755 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 89.49 |
Mean single sequence MFE | -20.13 |
Consensus MFE | -15.03 |
Energy contribution | -14.92 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -2.59 |
Structure conservation index | 0.75 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15078663 92 + 22407834 UUUAGCCAUUUCUGUUCAAGUCUGGCAUAUUUAUGCAAAAGACUUGUAACUUAAAUGGUAGAUUAAGUUUAUCUAAAUAUAUAUUUCAUUGA ....(((((((..((((((((((.((((....))))...))))))).)))..)))))))((((.......)))).................. ( -25.10) >DroSec_CAF1 23320 92 + 1 UUUAGCUAUUUGCGUUCAAGUCUGACAUAUUUAAGCAGAAGACUUGUAACUUAAAUGCUAGAUUAGGCUUAUCUAAAUAUAUAUGUUAUUGA ((((((.(((((.((((((((((................))))))).))).)))))))))))(((((....)))))................ ( -18.69) >DroSim_CAF1 20432 91 + 1 U-UAACUAUUUCUGUUCAAGUCUGACAUAUUUAAGCAGAAGACUUGUAACUUAAAUGGUACAUUAGGCUUAUCUAAAUAUAUAUAUUAUUGA .-..(((((((..((((((((((................))))))).)))..)))))))...(((((....)))))................ ( -16.59) >consensus UUUAGCUAUUUCUGUUCAAGUCUGACAUAUUUAAGCAGAAGACUUGUAACUUAAAUGGUAGAUUAGGCUUAUCUAAAUAUAUAUAUUAUUGA ....(((((((..((((((((((................))))))).)))..)))))))................................. (-15.03 = -14.92 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:29 2006