Locus 5327

Sequence ID 2L_DroMel_CAF1
Location 15,071,743 – 15,071,838
Length 95
Max. P 0.774918
window8463

overview

Window 3

Location 15,071,743 – 15,071,838
Length 95
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.75
Mean single sequence MFE -20.54
Consensus MFE -15.97
Energy contribution -16.75
Covariance contribution 0.78
Combinations/Pair 1.11
Mean z-score -1.40
Structure conservation index 0.78
SVM decision value 0.54
SVM RNA-class probability 0.774918
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15071743 95 + 22407834
CGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG---UGCCAAAUUUAGAA-----------CGGAAAACA----AA
....(((..((((((....))))))((((.......(((((......)))))(((((.....)))))...---))))..........-----------)))......----.. ( -23.70)
>DroPse_CAF1 16773 94 + 1
CGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUAGUGCCAAAGACAAG---------------ACAACA----AA
.........((((((....))))))((((........((((......)))).(((((.....)))))......)))).........---------------......----.. ( -21.70)
>DroGri_CAF1 17782 104 + 1
CGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUUGAGAACGGUAAGCC-----AUAUAGAUAAAUGUACAUAUAUAGAAGACA----UA
...(((...((((((....))))))(((.........((((......)))).(((.........)))..)))-----.....)))......................----.. ( -18.60)
>DroWil_CAF1 25419 95 + 1
CGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACUAUCGAGAAUGGUGAG---UGACAAA----AGA-----------CGAAAAAUAGUUAAA
....((((.((((((....))))))((((.............)))).((....)).))))..........---.......----.((-----------(........)))... ( -16.42)
>DroAna_CAF1 16957 90 + 1
UGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG---UGUCAAAGCCAAA----------------AAACA----AC
.........((((((....))))))(((.........((((......))))(((((((......))))..---.)))...)))...----------------.....----.. ( -21.10)
>DroPer_CAF1 17039 94 + 1
CGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUAGUGCCAAAGACAAG---------------ACAACA----AA
.........((((((....))))))((((........((((......)))).(((((.....)))))......)))).........---------------......----.. ( -21.70)
>consensus
CGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG___UGCCAAAGACAAA_______________AAAACA____AA
.........((((((....))))))((((........((((......)))).(((((.....)))))......)))).................................... (-15.97 = -16.75 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:28 2006