Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,060,829 – 15,060,920 |
Length | 91 |
Max. P | 0.657289 |
Location | 15,060,829 – 15,060,920 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 76.35 |
Mean single sequence MFE | -15.24 |
Consensus MFE | -10.62 |
Energy contribution | -11.18 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.09 |
Structure conservation index | 0.70 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15060829 91 - 22407834 GCCUA--UCAUCUA------GAAAUUAAUCUACAAUCAAUAUU-UCC-CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA .....--.....((------((......))))...........-...-.((.(((.(((((((((...............)))).))))).))).)).... ( -16.76) >DroVir_CAF1 4837 92 - 1 ---UGAAAUAGAUUGAAAACGAAAUGAAUUGAU---AA--ACGCUUU-UUCAGGUGAGGACACCUCGCAAUGGAAGAAAAUGAUAGUGCUGAACAAUAACA ---........................((((..---..--.((((((-(((..((((((...))))))....))))).......)))).....)))).... ( -12.91) >DroSec_CAF1 5286 91 - 1 GCCUA--UUAGCUA------GAAAAUAAUCUACAAUCAAUAUU-UCC-CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA ((...--...))((------((......))))...........-...-.((.(((.(((((((((...............)))).))))).))).)).... ( -16.96) >DroSim_CAF1 5998 91 - 1 GACUA--UUAGCUA------GAAAAUAAUCUACAAUCAAUAUU-UUC-CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA (((((--((.(.((------((......)))))........((-(((-((...(((.((...)).)))..))))))).)))))))................ ( -18.40) >DroEre_CAF1 5523 79 - 1 ---------------------AAAACAAUCUACAAUCAAUUUU-UUCCCGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCUUAACCAGCAACA ---------------------......................-.....((.(((.(((((((((...............)))).))))).))).)).... ( -14.46) >DroYak_CAF1 5170 91 - 1 ACCUA--UUAGCUA------CAAAACAAUCUACAAUCAAUUUU-AUC-CGCAGGCGAGGACACCACACAAUGGAAGAAAAUGGUCGUCUUAACUAGCAACA .....--.......------.......................-...-.((.((..(((((((((...............)))).)))))..)).)).... ( -11.96) >consensus GCCUA__UUAGCUA______GAAAAUAAUCUACAAUCAAUAUU_UUC_CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA .................................................((.(((.((((((((.................))).))))).))).)).... (-10.62 = -11.18 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:22 2006