Locus 5323

Sequence ID 2L_DroMel_CAF1
Location 15,058,153 – 15,058,249
Length 96
Max. P 0.546943
window8455

overview

Window 5

Location 15,058,153 – 15,058,249
Length 96
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 73.10
Mean single sequence MFE -27.05
Consensus MFE -17.69
Energy contribution -18.29
Covariance contribution 0.60
Combinations/Pair 1.26
Mean z-score -1.30
Structure conservation index 0.65
SVM decision value 0.03
SVM RNA-class probability 0.546943
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15058153 96 + 22407834
-----------------------GUUUCAGAGUUGUCGAAGCACCUUUUUGUACUUAUUACGGAUUUUUCUCCUUAUUUGACUGUAGCAAUUAGAGAGCUUGGCAACCCUAGAACAUGA
-----------------------(((..((.((((((.((((.(((..((((((....((.(((......))).)).......)).))))..)).).)))))))))).))..))).... ( -23.20)
>DroSec_CAF1 2479 95 + 1
------------------------UUUUAGAGUUGUCAAAGCACCUUUUUGUACUUGCCACGGAUUUUUCUGCUUAUUUGACUGUAGCAAUUAAAUAGCUUGGCAACCCUGGAACAUGA
------------------------((((((.((((((((.((..................((((....))))..(((((((.((...)).))))))))))))))))).))))))..... ( -20.70)
>DroSim_CAF1 3279 95 + 1
------------------------UUUUAGAGUUGUCGAAGCACCUUUUUGUACUUGCCACGGAUUUUUCUGCUUAUUUGACUGUAGCAAUUAAAGAGCUUGGCAACCCUGGAACAUGA
------------------------((((((.((((((.((((...((((((...((((.((((..................)))).)))).)))))))))))))))).))))))..... ( -21.97)
>DroEre_CAF1 2830 116 + 1
CU--UGUGUUAUGUUUCCGUUAUGUUUCAGGGUUGUCGAAGCGCCAUUAUGUAGUUGCCACGGAAUU-UCUUUCUAUUUGACUGAAGCAAUUCGGGAGCUUGGCAGCCCUGUAGCAAGA
..--..................((((.((((((((((.((((.((.......((((.....((((..-...))))....))))(((....))).)).)))))))))))))).))))... ( -34.50)
>DroYak_CAF1 1915 115 + 1
CUUGUGU---CAGUCGCCGUUAUGUUUUAGGGUUGUCGAAGCGACAUAAUGUAGUUGCCACGGAGUU-UCUUUAUAUUUGACCGUUGAAAUUCGAGAGCUUGGCUACCCUGAAGCAUGA
...(((.---....)))..((((((((((((((.(((((.(((((........)))))....(((((-((................)))))))......))))).)))))))))))))) ( -34.89)
>consensus
_______________________GUUUUAGAGUUGUCGAAGCACCUUUUUGUACUUGCCACGGAUUUUUCUGCUUAUUUGACUGUAGCAAUUAGAGAGCUUGGCAACCCUGGAACAUGA
.......................(((((((.((((((.((((((......))..((((.((((..................)))).)))).......)))))))))).))))))).... (-17.69 = -18.29 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:21 2006