Locus 5322

Sequence ID 2L_DroMel_CAF1
Location 15,054,360 – 15,054,480
Length 120
Max. P 0.540787
window8454

overview

Window 4

Location 15,054,360 – 15,054,480
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.00
Mean single sequence MFE -32.60
Consensus MFE -28.00
Energy contribution -27.84
Covariance contribution -0.16
Combinations/Pair 1.20
Mean z-score -1.24
Structure conservation index 0.86
SVM decision value 0.01
SVM RNA-class probability 0.540787
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15054360 120 + 22407834
CUUGGCAGGGGAAUUAUCGGAGCCAACAUACACGUUAAGCUUCUGAAACUGCCAAUAAAUAGGAUGGUCGUGAGAUUCAUCACUUACCGGAAGCUAAACGGAUACCAUCCGUUUCUAUUU
.(((((((..((....))(((((.(((......)))..))))).....)))))))......(((((((.((((......))))...(((.........)))..))))))).......... ( -34.70)
>DroSec_CAF1 22953 120 + 1
CUUGGCAGGGGAAUUAUCGGGGCCAACAUACACGUAAAGCUUCUGAAACUGCCAAUAAAUAGGAUGGUCGUGAGAUUCACCACUUACCGGAAGCUCACCGGAUACCAUCCGUUUCUAUUU
.(((((((..((....))(((((..((......))...))))).....)))))))......(((((((.(((.....)))......((((.......))))..))))))).......... ( -33.60)
>DroSim_CAF1 23685 120 + 1
CUUGGCAGGGGAAUUAUCGGGGCCAACAUACACGUAAAGCUUCUGAAACUGCCAAUAAAUAGGAUGGUCAUGAGAUUCAUCACUUACCGGAAGCUCAGCGGAUACCAUCCGUUUCUAUUU
.(((((((..((....))(((((..((......))...))))).....)))))))......((((((((.((((.(((...........))).))))...))..)))))).......... ( -30.00)
>DroEre_CAF1 22771 120 + 1
CUUGGCAGGGGAAUCAUCGGCGCCAACAUUCAUGUAAAGUUUCUAAAACUGCCAAUAAAUAGAAUGGUCGUGAGACUCGCCACUUAUCGGAAGCUAUCCGGAUACCAUCCGUUUCUAUUU
.(((((((.((((.(...(....).(((....)))...).))))....))))))).((((((((.((((....)))).........(((((.....)))))...........)))))))) ( -28.80)
>DroYak_CAF1 23199 120 + 1
CUUGGCAGGGGAAUCAUCGGGGCCAACAUCCAUGUGAAGUUUCUAAAACUGCCAAUAAAUAGGAUGGCCGUGAGAUUCACCGUUUAUCGGAAGCUAUCCGGAUACCAUCCGUUUCUAUUC
.(((((((.((((((((..(((......)))..))))...))))....)))))))......((((((.(....).....(((..((.(....).))..)))...)))))).......... ( -35.90)
>consensus
CUUGGCAGGGGAAUUAUCGGGGCCAACAUACACGUAAAGCUUCUGAAACUGCCAAUAAAUAGGAUGGUCGUGAGAUUCACCACUUACCGGAAGCUAACCGGAUACCAUCCGUUUCUAUUU
.(((((((..((....))(((((..((......))...))))).....)))))))......(((((((.(((.....)))......((((.......))))..))))))).......... (-28.00 = -27.84 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:20 2006