Locus 5321

Sequence ID 2L_DroMel_CAF1
Location 15,052,528 – 15,052,646
Length 118
Max. P 0.999838
window8453

overview

Window 3

Location 15,052,528 – 15,052,646
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.16
Mean single sequence MFE -36.56
Consensus MFE -35.32
Energy contribution -34.60
Covariance contribution -0.72
Combinations/Pair 1.14
Mean z-score -2.32
Structure conservation index 0.97
SVM decision value 4.21
SVM RNA-class probability 0.999838
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15052528 118 - 22407834
CGAUCAUGAAGCGUCUGCUUUUUCUU--GCAGUUCAGCGGUCAAGAGUUCUGAAAUUGACAAUAACAACAAAAACGCAGGCACACUUGUUUGUCCGGUUUGUUGUUUUUGCUGUUGCACA
.((....(((((....))))).)).(--((((..((((((((((...........)))))...(((((((((...(((((((....)))))))....)))))))))..)))))))))).. ( -31.50)
>DroSec_CAF1 21061 118 - 1
CGGUCAUGAAGCGUGUGCUUUUUCUU--GCAGUGCAGCGGUCAAGAGUUCUGAAAUUGACAAUAACAACAAAAACGCGGGCACACUUGUUUGUCCGGUUUGUUGUUCUUGCUGUUGCACA
..((...(((((....))))).....--)).(((((((((.((((((((........)))....((((((((....((((((........)))))).)))))))))))))))))))))). ( -39.20)
>DroSim_CAF1 21797 118 - 1
CGAUCAUGAAGCGUGUGCUUUUUCUU--GCAGUGCAGCGGUCAAGAGUUCUGAAAUUGACAAUAACAACAAAAACGCGGGCACACUUGUUUGUCCGGUUUGUUGUUCUUGCUGUUGCACA
.((....(((((....))))).))..--...(((((((((.((((((((........)))....((((((((....((((((........)))))).)))))))))))))))))))))). ( -39.60)
>DroEre_CAF1 20849 118 - 1
UGGACAUAAGGCGUUUGCCUUUUCUU--GCAGUGCAGCGGUCAAGAGUUCUAUAAUUGACAAUAACAACAAAAACGCAGGCACACUUGUUUGUCCGGUUUGUUGUUCUUGCUGUUGCACA
.(((...(((((....))))).))).--...(((((((((.((((((((........)))....((((((((...(((((((....)))))))....)))))))))))))))))))))). ( -40.30)
>DroYak_CAF1 20807 120 - 1
UGAUCACAAAGCGCAUGCUUUUUUUUUACCAGUGCAGCGGUUAAGAGUUCUAUAAUUGACAAUGACAACAAAAACGCAGGCACACUUGUUUGUCCAGUUUGGUGUUCUUGCUGUUGCACA
.......(((((....)))))..........((((((((((.(((((..(((.(((((.....(((((.......(((((....))))))))))))))))))..))))))))))))))). ( -32.21)
>consensus
CGAUCAUGAAGCGUGUGCUUUUUCUU__GCAGUGCAGCGGUCAAGAGUUCUGAAAUUGACAAUAACAACAAAAACGCAGGCACACUUGUUUGUCCGGUUUGUUGUUCUUGCUGUUGCACA
.......(((((....)))))..........(((((((((.((((((((........)))....((((((((...(((((((....)))))))....)))))))))))))))))))))). (-35.32 = -34.60 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:18 2006