Locus 5320

Sequence ID 2L_DroMel_CAF1
Location 15,042,596 – 15,042,714
Length 118
Max. P 0.951259
window8452

overview

Window 2

Location 15,042,596 – 15,042,714
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.19
Mean single sequence MFE -29.80
Consensus MFE -21.14
Energy contribution -20.57
Covariance contribution -0.56
Combinations/Pair 1.24
Mean z-score -1.93
Structure conservation index 0.71
SVM decision value 1.41
SVM RNA-class probability 0.951259
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15042596 118 - 22407834
GUUUGCCUGUUCACAGGGUUUGCUCAAGGAAUUGCUAUUAUUCCUGCGCACCAGGCGUCAUCCCAUUUCACAGGUGACCUUACUGUUUAGAUUUUUAGUUUUUCUUUAU-UCUAUUGUU-
((..((((.......))))..))..((((((..((((..(...(((.(((..(((.((((((..........)))))))))..))).)))..)..))))..))))))..-.........- ( -24.60)
>DroEre_CAF1 10802 118 - 1
GUUUGCCUGUUCGCAGGGAUUGCUCAAGGAAUUGCUAUUAUUCCUGCGCACCAGGCGUCAUCCCAUUUCGCAGGUGAGAUUAUUGACAACACUUUUAGUUUUACUUAAU-ACUAAUUAU-
(((.(((((..(((((((((.((..........))....)))))))))...)))))((((....((((((....))))))...)))))))....(((((..........-)))))....- ( -33.00)
>DroYak_CAF1 10989 118 - 1
GUUUGCCUGUUCGCAGGGAUUGCUCAAGGAAUUGCUAUUAUUCCUGCGCACCAGGCGUCAUCCCAUUUCACAGGUAACGCUACUGAUAAAUCUUGUAGUUUUACUUAAU-ACUACUCUU-
....(((((..(((((((((.((..........))....)))))))))...)))))...............((((((.(((((.((....))..))))).))))))...-.........- ( -33.70)
>DroAna_CAF1 11114 115 - 1
UUUUGCUUGCUCCCAGGGUCUCUUGAAGGAACUGCUGCUCUUCCUGCGCAGCCGCCGUCAUCCUAUUUCGCAGGUAAG-----UGUUUAAAAUUCUUGAUUUGUGUAUUAUUUAUUGAGA
.(((((((((.....(((.....(((.((....(((((.(.....).)))))..)).))).))).....)))))))))-----..........(((..((..(((...)))..))..))) ( -27.90)
>consensus
GUUUGCCUGUUCGCAGGGAUUGCUCAAGGAAUUGCUAUUAUUCCUGCGCACCAGGCGUCAUCCCAUUUCACAGGUAAC_UUACUGAUAAAACUUUUAGUUUUACUUAAU_ACUAUUGAU_
..((((((((.....(((........((((((.......))))))((((.....))))...))).....))))))))........................................... (-21.14 = -20.57 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:17 2006