Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,622,538 – 1,622,631 |
Length | 93 |
Max. P | 0.991737 |
Location | 1,622,538 – 1,622,631 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 74.76 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -15.10 |
Energy contribution | -15.22 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.54 |
Structure conservation index | 0.73 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1622538 93 - 22407834 -GC---C---CGUGGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCAGCC---AA----AGGAGCAAGGAAACAAUGCGGA -.(---(---..(((.((((((((((((........)))))))))))).........(((.....)))......))---).----.)).(((.(....)..)))... ( -23.70) >DroVir_CAF1 149487 81 - 1 -GC---CCAACGUUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACGACACCCAAC----AA----CAAAUU----------UG---- -..---.....((((.((((((((((((........)))))))))))).........(((.....)))......)----))----).....----------..---- ( -17.60) >DroEre_CAF1 103270 93 - 1 -GC---C---CGUUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACGACAAGCAGCC---AA----AAGAGCAAGGAAACCAUGCGAA -((---.---((((((((((((((((((........))))))))))))...))))))(((.....)))..))....---..----....(((.(....)..)))... ( -22.40) >DroYak_CAF1 101939 98 - 1 GGC---C---CGUUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCCAAC---AAAAAAAAAAGCUAGCAAACAUUGCGGA (((---.---((((((((((((((((((........))))))))))))...))))))(((.....)))..)))...---..............(((.....)))... ( -23.50) >DroMoj_CAF1 156335 84 - 1 -GCGUCCAAACGUUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAUCCAGC----AA----CAAAUU----------UG---- -((.......((((((((((((((((((........))))))))))))...))))))(((.....))).....))----..----......----------..---- ( -18.90) >DroAna_CAF1 133081 90 - 1 -GC---C---CGUUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCGCACCAACAAGACACCCACAAAGAAAAAAGU----------UACGAG -((---(---((((((((((((((((((........))))))))))))...)))))))..)).............................----------...... ( -17.30) >consensus _GC___C___CGUUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCAACC___AA____AAAAGC__________UGCG_A ..........((((((((((((((((((........))))))))))))...))))))(((.....)))....................................... (-15.10 = -15.22 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006