Locus 5319

Sequence ID 2L_DroMel_CAF1
Location 15,040,702 – 15,040,811
Length 109
Max. P 0.685109
window8451

overview

Window 1

Location 15,040,702 – 15,040,811
Length 109
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 88.51
Mean single sequence MFE -24.87
Consensus MFE -19.89
Energy contribution -19.67
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.80
SVM decision value 0.32
SVM RNA-class probability 0.685109
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15040702 109 + 22407834
GUUAUUAAGUGUCCAAAGUUCGUUUGUUUGUUUCUAAACGAAAUGAACUUAAGACAUUUAACUACGUGUU-UGCACGUUUGUUUGUGUCCGAAGUAUAAUUUUCUAACCG
(((((((((((((..(((((((((((((((....))))).))))))))))..)))))))))..(((((..-..)))))............((((......)))))))).. ( -28.10)
>DroSec_CAF1 9353 102 + 1
--UAUUAAGUGUCCAAAGUUCGUUGGUUUGUUUCUAAACGAAAUGAAUUUAAGACAUUUAACUACGUGUUUUGCAC------CUGUGUCCUAAGUUUACUUUUCUGACAG
--..(((((((((..(((((((((.(((((....)))))..)))))))))..)))))))))....(((.....)))------...((((..(((....)))....)))). ( -23.70)
>DroSim_CAF1 9354 102 + 1
--UAUUAAGUGUCCAAAGUUCGUUGGUUUGUUUCUAAACGAAAUGAAUUUAAGACAUUUAACUACGUGUUUUGCAC------CUGUGUCCAAAGUUUACUUUACUGACCG
--..(((((((((..(((((((((.(((((....)))))..)))))))))..)))))))))....(((.....)))------..(.(((.((((....))))...)))). ( -22.80)
>consensus
__UAUUAAGUGUCCAAAGUUCGUUGGUUUGUUUCUAAACGAAAUGAAUUUAAGACAUUUAACUACGUGUUUUGCAC______CUGUGUCCAAAGUUUACUUUUCUGACCG
....(((((((((..(((((((((.(((((....)))))..)))))))))..)))))))))....(((.....))).................................. (-19.89 = -19.67 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:16 2006