Locus 5317

Sequence ID 2L_DroMel_CAF1
Location 15,038,222 – 15,038,320
Length 98
Max. P 0.964600
window8449

overview

Window 9

Location 15,038,222 – 15,038,320
Length 98
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -34.53
Consensus MFE -22.19
Energy contribution -22.53
Covariance contribution 0.34
Combinations/Pair 1.31
Mean z-score -1.92
Structure conservation index 0.64
SVM decision value 1.57
SVM RNA-class probability 0.964600
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15038222 98 - 22407834
GUGUAUACGUGAAGGUCAGACCGGUGGCAUAAAUUAUUCCAUCGUUGCGCACCAGCGAAAUGGGCACCUGCGUGGGCUGACGUACCUGC-----AAGGACCAU---------
.............((((....((((((.(((...))).))))))((((((.(((......)))))...(((((......)))))...))-----)).))))..--------- ( -27.10)
>DroPse_CAF1 7217 107 - 1
GGGUAUAGGUGAAUGUCAGGCCCGUGGCAUAGAUAAUGCCAUCGUUGCGCACCAACGAAAUGGGCACCUGUGUGGGCUGGCGUACCUAU-----CAAACGCAUAGAUAUAGA
(.((((((((..((((((((((((((((((.....))))).((((((.....)))))).)))))).((.....)).)))))))))))))-----...)).)........... ( -39.60)
>DroWil_CAF1 21323 96 - 1
GUGUAUAGGUAAAGGUUAAACCAGUUGCAUAAAUUAUUCCAUCAUUGCGCACCAAUGAAAUGGGAACUUGUGUCGGCUGACGUACCUUU-----AAAGA--AU---------
.........(((((((.....(((((((((((....(((((((((((.....))))))..)))))..))))).))))))....))))))-----)....--..--------- ( -25.60)
>DroMoj_CAF1 7548 93 - 1
GCGUAUAGGUGAACGUCAGGCCAGUGGCAUAAAUGAUGCCAUCAUUGCGCACCAGCGAUAUGGGCACCUGUGUCGGCUGUCGCACCUGU--------CG---------AA--
.((.(((((((..((.(((.((.(((((((.....)))))))....((......))(((((((....)))))))))))).)))))))))--------))---------..-- ( -36.30)
>DroAna_CAF1 6673 103 - 1
GUGUGUAGGUGAAGGUCAGCCCGGUGGCGUAAAUAAUGCCGUCGUUUCGCACCAAGGAUAUGGGCACCUGUGUGGGCUGUCGUACCUGCCAUAGAAGAAGAGU---------
(((.(((((((...(.(((((((..(((((.....)))))..).....((.(((......)))))........)))))).).))))))))))...........--------- ( -39.00)
>DroPer_CAF1 7353 107 - 1
GGGUAUAGGUGAAUGUCAGGCCCGUGGCAUAGAUAAUGCCAUCGUUGCGCACCAACGAAAUGGGCACCUGUGUGGGCUGGCGUACCUAU-----CAAACGCAUAGAUAUAGA
(.((((((((..((((((((((((((((((.....))))).((((((.....)))))).)))))).((.....)).)))))))))))))-----...)).)........... ( -39.60)
>consensus
GUGUAUAGGUGAAGGUCAGGCCAGUGGCAUAAAUAAUGCCAUCGUUGCGCACCAACGAAAUGGGCACCUGUGUGGGCUGACGUACCUGU_____AAAAAGCAU_________
....(((((((...(((((.((.(((((((.....)))))))....((((((((......))).....))))).))))))).)))))))....................... (-22.19 = -22.53 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:14 2006