Locus 5316

Sequence ID 2L_DroMel_CAF1
Location 15,035,468 – 15,035,562
Length 94
Max. P 0.617003
window8448

overview

Window 8

Location 15,035,468 – 15,035,562
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 91.19
Mean single sequence MFE -27.92
Consensus MFE -23.52
Energy contribution -23.67
Covariance contribution 0.14
Combinations/Pair 1.19
Mean z-score -1.71
Structure conservation index 0.84
SVM decision value 0.17
SVM RNA-class probability 0.617003
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15035468 94 - 22407834
AGCGUUUCGAGCAGAUCUUGACUAGCGACUAGCGGUAGUGGCGGCUGGCUUCUGUUUAAGGCUGCAACUAGCGCUCGAGUUAUAUUUAUAAUAU
.((...(((((.....)))))...))((((((((.((((.((((((.((....))....)))))).)))).))))..))))............. ( -29.20)
>DroPse_CAF1 4448 92 - 1
-GUAUUUUGAAAAGCACUUGACUAGCGACUAGCGGUUGUAGCGGCUGGCUUCUGUUUAACGCUGCAACUAGCGCUUGAGUUAUAUUUAUAAUA-
-.................(((((((((.((...((((((((((...(((....)))...))))))))))))))))..)))))...........- ( -25.70)
>DroSec_CAF1 4007 94 - 1
AGCGUUUCGAGCAGAUCUUGACUAGCGACUAGCGGUAGUGGCGGCUGGCUUCUGUUUAAGGCUGCAACUAGCGCUCCAGUUAUAUUUAUAAUAU
.((...(((((.....)))))...))((((((((.((((.((((((.((....))....)))))).)))).))))..))))............. ( -29.20)
>DroEre_CAF1 3870 94 - 1
AGCGUUUUAAGCAGAUCUUGACUAGCGACUAGCGGUAGUAGCGGCUGGCUUCUGUUUAAGGCUGCAGCUAGCGCUCGAGUUAUAUUUAUAAUAU
((((((....((((.((((((.(((...(((((.((....)).)))))...))).))))))))))....))))))...(((((....))))).. ( -28.30)
>DroYak_CAF1 3957 94 - 1
AGCGUUUUGGGCAGAUCUUGACUAGCGACUAGCGGUAGUAGCGGCUGGCUUCUGUUUAAGGCUGCAACUAGCGCUCGAGUUAUAUUUAUAAUAU
((((((....((((.((((((.(((...(((((.((....)).)))))...))).))))))))))....))))))...(((((....))))).. ( -29.40)
>DroPer_CAF1 4509 92 - 1
-GUAUUUUGAAAAGCACUUGACUAGCGACUAGCGGUUGUAGCGGCUGGCUUCUGUUUAACGCUGCAACUAGCGCUUGAGUUAUAUUUAUAAUA-
-.................(((((((((.((...((((((((((...(((....)))...))))))))))))))))..)))))...........- ( -25.70)
>consensus
AGCGUUUUGAGCAGAUCUUGACUAGCGACUAGCGGUAGUAGCGGCUGGCUUCUGUUUAAGGCUGCAACUAGCGCUCGAGUUAUAUUUAUAAUAU
.((...(((((.....)))))...))((((((((.((((.((((((.((....))....)))))).)))).))))..))))............. (-23.52 = -23.67 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:13 2006