Locus 5312

Sequence ID 2L_DroMel_CAF1
Location 15,025,884 – 15,025,974
Length 90
Max. P 0.596591
window8441

overview

Window 1

Location 15,025,884 – 15,025,974
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -17.57
Consensus MFE -13.13
Energy contribution -13.13
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.07
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.596591
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15025884 90 - 22407834
ACAUAGCACCGUAUGCUAGUGUAAAACCGGUGGAUAGUAACCAAGCCCGCGCUUGACAUAUCUAAUGGAUAA---UUUUAUAUCA----AAUUAAC-U-
...(((((.....)))))(((((((((((.((((((.....(((((....)))))...)))))).)))....---))))))))..----.......-.- ( -19.40)
>DroSec_CAF1 19799 89 - 1
ACAUAGCACCGUAUGCUAGUGUAAAACCGGUGGAUAGUAACCAAGCCCGCGCUUGACAUAUCUGAUGGAUG----UUUUAUAUCA----AAUUAAC-U-
...(((((.....)))))(((((((((((..(((((.....(((((....)))))...)))))..)))...----))))))))..----.......-.- ( -18.70)
>DroSim_CAF1 19727 89 - 1
ACAUAGCACCGUAUGCUAGUGUAAAACCGGUGGAUAGUAACCAAGCCCGCGCUUGACAUAUCUGAUGGAUA----UUUUAUAUCA----AAUGAAC-U-
...(((((.....)))))(((((((((((..(((((.....(((((....)))))...)))))..)))...----))))))))..----.......-.- ( -18.70)
>DroWil_CAF1 32906 79 - 1
ACAUAGCACCGUAUGCUAAUGUAAAACCGGUGGAUAAUAACCAAGCUCGAGCUUGACAAAUCUAGA---------------AUUA----AAAAAAC-UC
......(((((..(((....)))....))))).........(((((....)))))...........---------------....----.......-.. ( -13.70)
>DroYak_CAF1 22464 93 - 1
ACAUAGCACCGUAUGCUAGUGUAAAACCGGUGGAUAGUAACCAAGCCCGCGCUUGACAAAUCUAAUGA----AAUAUUGAUAAAGUAAAAGUUAGA-U-
......(((((..(((....)))....))))).........(((((....)))))....(((((((..----..((((.....))))...))))))-)- ( -18.00)
>DroMoj_CAF1 22062 88 - 1
ACAUAGCACCGUAUGCUAAUGUAAAACCGGUGGAUAAUAGCCAAGCACGAGCUUGACAGAUCUGAACAAA-----GGUAU-AGAA----AAUUAGUCU-
......(((((..(((....)))....)))))(((....(.(((((....))))).)...((((.((...-----.)).)-))).----.....))).- ( -16.90)
>consensus
ACAUAGCACCGUAUGCUAGUGUAAAACCGGUGGAUAGUAACCAAGCCCGCGCUUGACAUAUCUAAUGGAU_____UUUUAUAUCA____AAUUAAC_U_
......(((((..(((....)))....))))).........(((((....)))))............................................ (-13.13 = -13.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:07 2006