Locus 5310

Sequence ID 2L_DroMel_CAF1
Location 15,013,361 – 15,013,465
Length 104
Max. P 0.803746
window8439

overview

Window 9

Location 15,013,361 – 15,013,465
Length 104
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 84.27
Mean single sequence MFE -25.73
Consensus MFE -17.30
Energy contribution -17.70
Covariance contribution 0.40
Combinations/Pair 1.11
Mean z-score -2.15
Structure conservation index 0.67
SVM decision value 0.63
SVM RNA-class probability 0.803746
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15013361 104 + 22407834
AAGGUGUAGAGUGCCGCGAAGAGAGGCGGAGAGAAUACACUUGCAAAAAUGUGAGCAGCUAAUUCCCAGGGAUGUUAAAAA---AAAU-U-AAACCCUCAUGGUUCAAA
.(((((((.....((((........))))......))))))).........(((((...........((((...((((...---...)-)-)).))))....))))).. ( -21.46)
>DroSec_CAF1 7377 108 + 1
AAGGUGUAGAGUGCCGCGAAGAGAGGCGGAGAGAAUACACUUGAAAAAAAGCGAACAGCUAAUUUCAAGGGAUGCUCAAAAAAAAAAU-GAAAACCCUCAUGGUUCAAA
.(((.((......((((........)))).(((....(.(((((((...(((.....)))..))))))))....)))...........-....)))))........... ( -22.80)
>DroSim_CAF1 6969 104 + 1
AAGGUGUAGAGUGCCGCGAAGAGAGGCGGAGAGAAUACACUUGAAA-AAAGCGAGCAGCUAAUUUCAAGGGAUGCUCAAAA---AAAU-GAAAACUCUGAUGGUUCAAA
......((((((.((((........)))).(((....(.(((((((-..(((.....)))..))))))))....)))....---....-....)))))).......... ( -27.00)
>DroEre_CAF1 8429 108 + 1
AAGGUGUAGAGUGCCGCGAAGAGAGGCGGAGAGAAUACACUUGAAC-AAAUCAAGCAGACAUUUGCAUGGGAUGUUAAAAAAAUAGAUUGACAACCCUCAUUGCUCAAA
.(((((((.....((((........))))......)))))))((.(-((.....((((....))))..(((.((((((.........)))))).)))...))).))... ( -27.30)
>DroYak_CAF1 10085 107 + 1
AAGGUGUAGAGUGCCGCGAAGAGAGGCGGAGAGAAUACACUUGAAG-AAAUCGAGCAGCCAUUUGCAAGGGAUGCUCAAAAAAUAAAUUGGCAGC-CUUGUUGUCCAAG
.(((((((.....((((........))))......)))))))....-.....(((((.((........))..)))))..........((((((((-...)))).)))). ( -30.10)
>consensus
AAGGUGUAGAGUGCCGCGAAGAGAGGCGGAGAGAAUACACUUGAAA_AAAGCGAGCAGCUAAUUGCAAGGGAUGCUCAAAAAA_AAAU_GAAAACCCUCAUGGUUCAAA
.(((((((.....((((........))))......)))))))..........(((((.((.........)).)))))................................ (-17.30 = -17.70 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:05 2006