Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,010,341 – 15,010,435 |
Length | 94 |
Max. P | 0.576190 |
Location | 15,010,341 – 15,010,435 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 87.66 |
Mean single sequence MFE | -19.60 |
Consensus MFE | -14.40 |
Energy contribution | -14.56 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.20 |
Mean z-score | -1.64 |
Structure conservation index | 0.73 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15010341 94 - 22407834 AAUAAGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGGCAUGACAUUUGAAUUCAAUGAGUCUGCAUAGAAUUCGCAAGCAA-- .............((((....)))).((((((.(.......((((......)))).....((((((.(((......))).))))))))))))).-- ( -20.40) >DroSec_CAF1 4463 94 - 1 AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGACAUGACAUUUGAAUUCAAUGAGUGUGCAUAGAAUUCGCAAGCAA-- .............((((....)))).((((((.(.......((((......)))).....((((((.(((......))).))))))))))))).-- ( -20.40) >DroSim_CAF1 4494 94 - 1 AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGACAUGACAUUUGAAUUCAAUGAGUGUGCAUAGAAUUCGCAAGCAA-- .............((((....)))).((((((.(.......((((......)))).....((((((.(((......))).))))))))))))).-- ( -20.40) >DroEre_CAF1 5376 87 - 1 AGCAGGCAUAAGAUUGCGGAAGUAACGGCCUGACUACCCAUUCAUAUUGACUUCA-------AUUCAAUGAAUCUGCAUAGAAUUU--AAGCAAAA (((((((....(.((((....))))).))))).))...........(((.(((.(-------((((.(((......))).))))).--)))))).. ( -21.90) >DroYak_CAF1 7062 94 - 1 AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCAUUCAUAUUGACUUGACAUUCGCAUUCAAUGAAUCUGCAUAGAAUUCCCAAGCAA-- .............((((....)))).((((((.(((..((.......))..)))......(.((((.(((......))).)))).).)))))).-- ( -14.90) >consensus AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGACAUGACAUUUGAAUUCAAUGAGUCUGCAUAGAAUUCGCAAGCAA__ ..((((((...(.((((....)))))))))))............................((((((.(((......))).)))))).......... (-14.40 = -14.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:04 2006