Locus 5308

Sequence ID 2L_DroMel_CAF1
Location 14,997,666 – 14,997,779
Length 113
Max. P 0.590028
window8437

overview

Window 7

Location 14,997,666 – 14,997,779
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.20
Mean single sequence MFE -33.38
Consensus MFE -14.72
Energy contribution -14.08
Covariance contribution -0.64
Combinations/Pair 1.30
Mean z-score -2.19
Structure conservation index 0.44
SVM decision value 0.11
SVM RNA-class probability 0.590028
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14997666 113 + 22407834
GACUGAAUCUAAAUCGCUGCUCGU-------GGCUCGAGGUUAGCCUUGCCCAUGGCAUACAAAGCUGAAAAUUGAAUUUGGCUUAUUUUUUAGGUCUCUCGUCAGGUUCAAAACUAUUA
(((.(((((((((....(((.(((-------((..(((((....))))).))))))))....((((..((.......))..))))....))))))).))..)))................ ( -29.50)
>DroPse_CAF1 134523 102 + 1
-----AAUUCAGAGCUCGGCUCGUGACUCGAG--UCGAGGCUAGCCUUGCCCAUGGCAUACAAAUUUGCCAAUUGAUU-----------UUUAGGUCUCUCCUCGGGUUCAAAACUAUUA
-----......((((((((((((.....))))--))((((..(((((....(((((((........)))))..))...-----------...))).))..)))))))))).......... ( -33.70)
>DroEre_CAF1 97351 120 + 1
GACUGAAUCUAAAUCGUAGCUCGUGGCUUGUGGCUCGAGGUUAGCCUUGCCCAUGGCAUACAAAGCAGAAAAUUGAUUUUGGCUUAUUUUUUAGGUCUCUCCUCAGGUUCAAAACUAUUA
...(((((((((((((....((...(((((((((((((((....))))).....))).))).)))).))....)))))).((((((.....)))))).......)))))))......... ( -28.70)
>DroYak_CAF1 96321 120 + 1
GACUGAAUCUAAAUCGCAGCUCGUGGCUCGUGGCUCGAGGUUAGCCUUGCCCAUGGCAUACAAACCUGAGAAUUGAUUUUGGCUUAUUUUUUAGGUCUCUCCUCAGGUUCAAAACUAUUA
(((((...........))).))(((((.(((((..(((((....))))).))))))).))).((((((((....((....((((((.....))))))))..))))))))........... ( -33.00)
>DroAna_CAF1 92280 113 + 1
GUUUGAAUCCGAAUCGAGGCUCGU-------GCCUCGAGGUUAGCCUUGCCCAUGGCAUACAGAGUCGAACAUUGGUUUUGGGAUAUUUUUUGGGUCUCUCCUCGGGUUCAAAACUAUUA
.(((((((((((...(((((((((-------(((.(((((....))))).....))))).((((..(((...)))..))))...........)))))))...)))))))))))....... ( -41.70)
>DroPer_CAF1 131964 102 + 1
-----AAUUCAGAGCUCGGCUCGUGACUCGAG--UCGAGGCUAGCCUUGCCCAUGGCAUACAAAUUUGCCAAUUGAUU-----------UUUAGGUCUCUCCUCGGGUUCAAAACUAUUA
-----......((((((((((((.....))))--))((((..(((((....(((((((........)))))..))...-----------...))).))..)))))))))).......... ( -33.70)
>consensus
GACUGAAUCCAAAUCGCGGCUCGUG_CUCG_GGCUCGAGGUUAGCCUUGCCCAUGGCAUACAAAGCUGAAAAUUGAUUUUGGCUUAUUUUUUAGGUCUCUCCUCAGGUUCAAAACUAUUA
...(((((((...((..(.((((............)))).)..(((........)))..........)).......................(((.....))).)))))))......... (-14.72 = -14.08 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:03 2006