Locus 5306

Sequence ID 2L_DroMel_CAF1
Location 14,988,979 – 14,989,073
Length 94
Max. P 0.750390
window8434

overview

Window 4

Location 14,988,979 – 14,989,073
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 92.79
Mean single sequence MFE -26.93
Consensus MFE -23.51
Energy contribution -23.57
Covariance contribution 0.06
Combinations/Pair 1.27
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 0.47
SVM RNA-class probability 0.750390
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14988979 94 - 22407834
ACUUUUGCCUACGUCAUUGCUUCAGAAGCAGAAAUCAACAAUCGAAGCUGAUGAUGGUU-UCUCGCCGGUUUCAGUUGCUAUUUUGGUUUCUUAA
.................((((.....))))((((((((.(((.(.((((((...((((.-....))))...)))))).).))))))))))).... ( -21.00)
>DroSec_CAF1 76790 94 - 1
ACUUUUGCCUACGUCAUUGCCUCAGAAGCAGAAAUCAGCAGUCGAAGCUGAUGAUGGCU-UCUCGCCGGUUUCAGUUGCUGUUUUGGUUUCUUAA
.((((((....((....))...)))))).(((((((((((((...((((((...((((.-....))))...)))))))))))..))))))))... ( -26.50)
>DroSim_CAF1 75814 94 - 1
ACUUUUGCCUACGUCAUUGCCUCAGAAGCAGAAAUCAGCAGUCGAAGCUGAUGAUGGUU-UCUCGCCGGUUUCAGUUGCUGUUUUGGUUUCUUAA
.......................((((((.((((.((((((..(((((((.(((.....-..))).)))))))..)))))))))).))))))... ( -26.10)
>DroEre_CAF1 88369 94 - 1
ACUUUUGCCUACGUCAUUGCUUCAGAAGCAGAAAUCAGCAGUCGAAACUGAUGAUGGUU-UCUCGCCGGUUUCAGUUGCUGUUUUGGUUUCUUAA
.......................((((((.((((.((((((..(((((((.(((.....-..))).)))))))..)))))))))).))))))... ( -26.10)
>DroYak_CAF1 87414 95 - 1
ACUUUUGCCUACGUCAUUGCUUCAGAAGCAGAAAUCAGCAGUCGAAGCUGAUGAUGGUUUUCACGCCGGUUUCAGUUGCUGUUUUGGUUUCUUAA
.......................((((((.((((.((((((..(((((((.(((......)))...)))))))..)))))))))).))))))... ( -25.80)
>DroAna_CAF1 84836 94 - 1
ACUUUUGCCUACGUCAUGGCUCCAGAAGCAGAAGUCGGCAGUCGGAGCUGGCGAUGAUU-UCGCGCCGGGCUCAGUUGCUGUUUCGGUUUCUUAA
......(((........)))...((((((.((((.((((((.(.(((((((((.((...-.)))))).))))).))))))))))).))))))... ( -36.10)
>consensus
ACUUUUGCCUACGUCAUUGCUUCAGAAGCAGAAAUCAGCAGUCGAAGCUGAUGAUGGUU_UCUCGCCGGUUUCAGUUGCUGUUUUGGUUUCUUAA
.......................((((((.((((.((((((..(((((((.(((........))).)))))))..)))))))))).))))))... (-23.51 = -23.57 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:00 2006