| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,988,221 – 14,988,340 |
| Length | 119 |
| Max. P | 0.798505 |
| Location | 14,988,221 – 14,988,340 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -33.19 |
| Consensus MFE | -23.13 |
| Energy contribution | -24.63 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14988221 119 + 22407834 GGCUCUAUACUCACCUGUUUUCUGACACCCGGAAAGAUGACUAAAAAUGCUACAUAGAAUGUGGCAAAUAGCACUGAGACGGCUACGAUUGAGACAUCUCCGGUUACGGGUGUUCGAUU ....................((.((((((((((..((((.((.....((((((((...))))))))..((((.(......)))))......)).)))))))(....)))))))).)).. ( -30.50) >DroVir_CAF1 190759 119 + 1 GCUUCCAAACUCACCUGUUUACGUACACCCGGAAAUAUGACAAGGAAUGCCACAUAGAAUGUGGCAAACAGCACAGAUACAGCCACAAUGGACACAUCGCCCGUGACGGGUGUGCGAUU ......((((......)))).((((((((((................((((((((...)))))))).....(((.(((....((.....))....)))....))).))))))))))... ( -36.50) >DroGri_CAF1 165822 117 + 1 --UAUUAAACUCACCUGCUUUCGUACACCCGGAAAUAUGACCAGAAAUGCCACAUAGAAUGUGGCAAAUAGAACAGAUACGGCCACAAUAGACACAUCGCCGGUGACGGGUGUGCGAUU --..................(((((((((((................((((((((...)))))))).............((((...............))))....))))))))))).. ( -36.86) >DroWil_CAF1 105522 119 + 1 AACUAUUUGCUUACCUGUUUUCUUACACCCGGAAAUAUGACCAAAAAUGCCACAUAGAAUGUGGCAAAUAGUACAGAUACAGCCACAAUGGAUACAUCUCCAGUCACGGGUGUACGAUU ....................((.((((((((......((((......((((((((...))))))))......................((((......)))))))))))))))).)).. ( -30.60) >DroMoj_CAF1 156711 119 + 1 CUUUUCACACUCACCUGCUUACGCACACCAGGAAAUAUGACGAGGAACGCCACAUAGAAUGUGGCAAAGAGCACUGAGACAGCCACAAUGGAGACAUCGCCUGUGACGGGUGUUCGAUU (((.(((......((((...........)))).....))).)))(((((((.(((((..((((((................))))))(((....)))...)))))...))))))).... ( -32.59) >DroAna_CAF1 84074 113 + 1 ------GUUCUUACCUGCUUCCGUACACCCGGAAAGAUGACCAAAAAUGCAACAUAAAAUGUCGCAAAUAGCACGGAUACGGCUACUAUGGAGACGUCUCCGGUGACGGGCGUUCGAUU ------.......(..((.(((((.((((.(((..((((.(((....(((.((((...)))).)))..((((.((....))))))...)))...)))))))))))))))).))..)... ( -32.10) >consensus __UUCUAUACUCACCUGCUUUCGUACACCCGGAAAUAUGACCAAAAAUGCCACAUAGAAUGUGGCAAAUAGCACAGAUACAGCCACAAUGGAGACAUCGCCGGUGACGGGUGUUCGAUU .....................((((((((((................((((((((...)))))))).........(((....((.....))....)))........))))))))))... (-23.13 = -24.63 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:59 2006