Locus 5303

Sequence ID 2L_DroMel_CAF1
Location 14,962,172 – 14,962,266
Length 94
Max. P 0.954270
window8429

overview

Window 9

Location 14,962,172 – 14,962,266
Length 94
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 80.42
Mean single sequence MFE -15.32
Consensus MFE -8.42
Energy contribution -9.50
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -2.55
Structure conservation index 0.55
SVM decision value 1.44
SVM RNA-class probability 0.954270
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14962172 94 + 22407834
AUUCAUUCAUCCACUUCCUUCCACAUCCC--CCCAUUCAUAUA---CCCAUCCACAGGAUUCAGGCUGUUUCGCCUGUUUCUUAUGGCCUUUGUGGUUA
....................(((((....--............---.....(((.((((..(((((......)))))..)))).)))....)))))... ( -19.61)
>DroSim_CAF1 56732 96 + 1
AUUCAUUCAUCCACUUCCUUCCACAUCCCUCCCCAUUCAUAUA---CCCAUCCACAGGAUUCAGCCUGUUUCGCCUGUUUCUUAUGGCCUUUGUGGUUA
....................(((((..................---.......(((((......)))))...(((..........)))...)))))... ( -14.90)
>DroEre_CAF1 69528 94 + 1
AUUCAUUCAUCCACUUCCUUCCGCAAACC--CCAUUUGAUAUA---CCCAUCCACAGGAUUCAGCCUGUUUCGCCUGUUUCUUAUAGCCUUUGUGGUUA
....................(((((((..--(.((..((.(((---.......(((((......)))))......))).))..)).)..)))))))... ( -14.12)
>DroYak_CAF1 67674 97 + 1
AUUCAUUCACUCACUUCCCUCCGCAUCCC--CCGUAUCAUCCACUUCCCAUCCACAGGAUUCAGCCUGUUUCGCCUGUUUCUUAUGGCCUUUGUGGUUA
....................(((((....--(((((..(..((..........(((((......)))))......))..)..)))))....)))))... ( -14.89)
>DroAna_CAF1 66300 77 + 1
AUUCAUUCGCUCAGUCACUUC-------------AUCUACAUC---CCCAUCC-CAGG-----CCCUGUUUCGCCUGUUUCUUAUGGUCUUUGUGGUUA
.....................-------------..(((((..---.((((..-((((-----(........)))))......))))....)))))... ( -13.10)
>consensus
AUUCAUUCAUCCACUUCCUUCCACAUCCC__CCCAUUCAUAUA___CCCAUCCACAGGAUUCAGCCUGUUUCGCCUGUUUCUUAUGGCCUUUGUGGUUA
....................(((((............................(((((......)))))...(((..........)))...)))))... ( -8.42 =  -9.50 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:55 2006