Locus 5302

Sequence ID 2L_DroMel_CAF1
Location 14,957,844 – 14,957,954
Length 110
Max. P 0.857774
window8428

overview

Window 8

Location 14,957,844 – 14,957,954
Length 110
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.04
Mean single sequence MFE -33.10
Consensus MFE -21.30
Energy contribution -21.47
Covariance contribution 0.17
Combinations/Pair 1.21
Mean z-score -3.26
Structure conservation index 0.64
SVM decision value 0.81
SVM RNA-class probability 0.857774
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14957844 110 + 22407834
UCCUGUGGGCAUAAUAAAUAGCCCCAGCUUUUGGUCUGGCAGUUUUGUCAAAUAGCUCUUC-GGAGCUCAAAACACCUAAAAGCUGUUGUUUUUUUCC---AUGCCGG-----CCCAAG
..(((.((((..........)))))))...((((.((((((((((((......(((((...-.)))))))))))....((((((....))))))....---.))))))-----.)))). ( -39.30)
>DroSim_CAF1 52500 108 + 1
UCCUGUGGGCAUAAUAAAUAGCCUCAGCUUUUGGUCUGGCAGUUUUGUCAAAUAGCUCUUC-GGACCUCAAAACACCUAAAAGCUGUUGUUUUUUUCC---AUGCCGG-----CCCA--
....((.(((((...(((.(((..((((((((((..((((......))))...((.((...-.)).))........))))))))))..))).)))...---))))).)-----)...-- ( -31.80)
>DroEre_CAF1 65348 116 + 1
UCCUGUGGGCAUAAUAAAUAGCCCCAGCUUUUGGUCUGGCAGUUUUGUCAAAUAGCUCUUC-GGAGCUCAAAACACCUAAAAGCUGUUGUUUUUUUCCCCCCUGCCGACCAUGCUCA--
...((.((((..........))))))((...(((((.((((((((((......(((((...-.)))))))))))....((((((....))))))........))))))))).))...-- ( -38.20)
>DroWil_CAF1 68303 101 + 1
UCCUG-GGGCAUAAUAAAUAGCCCUAGCUUUUCGCCUGGCAGUUUUGUCAAAUAGCUCUUUUCUACCUCAAAACAUGUGAAAGGUAUU-------UUC---AUACCCU-----ACCA--
..(((-((((..........)))))))......((((.(((((((((.....(((.......)))...)))))).)))...))))...-------...---.......-----....-- ( -20.90)
>DroYak_CAF1 63369 108 + 1
UCCUGUGGGCAUAAUAAAUAGCCCAAGCUUUUGGUCUGGCAGUUUUGUCAAAUAGCUCUUC-GGAGCUCAAAACACCUAAAAGCUGUUGUGUUUUUCC---AUGCCGG-----CCCA--
.....(((((..........)))))......(((.((((((((((((......(((((...-.)))))))))))....((((((......))))))..---.))))))-----.)))-- ( -36.00)
>DroAna_CAF1 62413 101 + 1
UCCUGUGGGCAUAAUAAAUAGCCCCAGCUU-UGGUCUGGCAGUUUUGUCAAAUAGCUCUUC-UGAGCUUGAAACACCUGAAAGCUGUUUUUGCUUCC------GCAGA-----C-----
..(((((((((....(((((((.(((((..-..).))))(((.....(((...(((((...-.)))))))).....)))...))))))).)))..))------)))).-----.----- ( -32.40)
>consensus
UCCUGUGGGCAUAAUAAAUAGCCCCAGCUUUUGGUCUGGCAGUUUUGUCAAAUAGCUCUUC_GGAGCUCAAAACACCUAAAAGCUGUUGUUUUUUUCC___AUGCCGG_____CCCA__
......((((..........))))(((((((((((.((((......))))...(((((.....)))))......))).))))))))................................. (-21.30 = -21.47 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:54 2006