Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 214,555 – 214,675 |
Length | 120 |
Max. P | 0.654449 |
Location | 214,555 – 214,675 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -47.32 |
Consensus MFE | -25.09 |
Energy contribution | -26.10 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.31 |
Mean z-score | -2.07 |
Structure conservation index | 0.53 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 214555 120 - 22407834 AGCUGCACUGGAUCAAGCUGCCUUACAAUUUGGCUCCUUAGCGGGUCUGAAUCCCAGUCUGUUAGCAAAUCUUCCUGGACUGGGCGCAUUUGAUCCCAAGAAUCCUCUUGCUGCAUUUGA ...((((..((((((((.(((......(((..(..((.....))..)..)))(((((((((..((.....))..).)))))))).)))))))))))(((((....))))).))))..... ( -37.20) >DroPse_CAF1 8265 120 - 1 GGCUGCCUUGGAUCAGGCGGCGUUGCAGUUCAGCUCGCUGGCAGGGCUCAAUCCCAGUCUGUUGGCCAAUCUGCCGGGACUGGGAGGCUUCGAUCCGAAGAAUCCCCUGGCGGCCUUUGA ((((((((((((((.(.(((((..((......)).))))).).(((((...(((((((((..((((......)))))))))))))))))).)))))))((......)))))))))..... ( -58.10) >DroGri_CAF1 7900 120 - 1 UGCUGCCUUGGAUCAGGCCGCAUUGCAGUUUGGCUCGCUGGCCGGGCUGAGUCCCAGUUUGUUGGCCAGUCUGCCCGGACUGGGUGCAUUCGAUCCGAAGAAUCCGUUGGCCGCCUUCGA .((.(((.((((((.....(((((.(((((((((..(((((((((((((.....))))...)))))))))..).))))))))))))).((((...))))).)))))..))).))...... ( -48.60) >DroWil_CAF1 8545 116 - 1 ----GCCUUGGAUCAAGCAGCAUUGCAAUUUGGAUCCCUAGCAGGACUGAAUCCCAGUCUCUUGGCCAAUUUACCUGGCUUGGGUGCUUUCGAUCCAAAGAAUCCACUUGCGGCCUUCGA ----(((.((((((..((......))..((((((((...((((((((((.....))))))((.(((((.......))))).)).))))...))))))))).))))).....)))...... ( -38.50) >DroAna_CAF1 9819 120 - 1 UGCCGCCUUGGAUCAGGCUGCUCUGCAAUUCGGCUCUCUGGCCGGCCUGAAUCCCAACCUGCUGGCCAACCUGCCCGGACUAGGAGCAUUCGAUCCAAAGAAUCCACUGGCUGCCUUUGA .((.((((((((((.(..((((((....((((((....((((((((..(........)..))))))))....).)))))...))))))..))))))))((......))))).))...... ( -44.50) >DroPer_CAF1 8399 120 - 1 GGCUGCCUUGGAUCAGGCGGCGUUGCAGUUCAGCUCGCUGGCAGGGCUCAAUCCCAGUCUGUUGGCCAAUCUGCCGGGACUGGGAGGCUUCGAUCCGAAAAAUCCCCUGGCGGCCUUUGA ((((((((((((((.(.(((((..((......)).))))).).(((((...(((((((((..((((......)))))))))))))))))).)))))))..........)))))))..... ( -57.00) >consensus GGCUGCCUUGGAUCAGGCGGCAUUGCAAUUCGGCUCGCUGGCAGGGCUGAAUCCCAGUCUGUUGGCCAAUCUGCCCGGACUGGGAGCAUUCGAUCCGAAGAAUCCACUGGCGGCCUUUGA .((.((((((((((.((.(((......((((((.((.......)).))))))((((((((...(((......))).)))))))).))).)))))))))..........))).))...... (-25.09 = -26.10 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:23 2006