Locus 5299

Sequence ID 2L_DroMel_CAF1
Location 14,935,917 – 14,936,019
Length 102
Max. P 0.508206
window8424

overview

Window 4

Location 14,935,917 – 14,936,019
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 89.48
Mean single sequence MFE -33.75
Consensus MFE -25.97
Energy contribution -26.64
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 0.77
SVM decision value -0.05
SVM RNA-class probability 0.508206
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14935917 102 - 22407834
UUGUGUGUUGCAUACAAAAGGGCGCUUAACGCUCAGCUCGCCGCAGAAAUAUUCGAAAGUGGCUGCAAUCGCAGCUGGAAUUGCAACAGCAGUAGCAACAAU
.....((((((.(((....(((((.....))))).(((.(..((((.......(....).((((((....))))))....))))..)))).))))))))).. ( -33.10)
>DroSec_CAF1 31337 102 - 1
UUGUGUGUUGCAUACAAAAGGGCGCUUAACGCUCAGCUCGCCGCAGAAAUAUUCGAAAGUGGCUGCAAUCGCAGCUGGAAUGGCAACAGCAGUUGCAACAAU
.....(((((((.((....(((((.....))))).(((.((((..........(....).((((((....))))))....))))...))).))))))))).. ( -34.20)
>DroSim_CAF1 30440 102 - 1
UUGUGUGUUGCAUACAAAAGGGCGCUUAACGCUCAGCUCGCCGCAGAAAUAUUCGAAAGUGGCUGCAAUCGCAGCUGGAAUGGCAACAGCAGUAGCAACAAU
.....((((((.(((....(((((.....))))).(((.((((..........(....).((((((....))))))....))))...))).))))))))).. ( -34.60)
>DroEre_CAF1 43702 102 - 1
UUGUGUGUUGCAUACAAAGGGGCGCUUAACGCUCAGCUCGCCGCAGAAAUAUUCAAAAGUGGCUGCAAUCGCAGCUGGAAUGGCAACAGCAGUGGCAACAAU
.....((((((.(((....(((((.....))))).(((.((((..((.....))......((((((....))))))....))))...))).))))))))).. ( -32.80)
>DroYak_CAF1 41107 102 - 1
UUGUGUGUUGCAUACAAAAGGGCGCUUAACGCUCAGCUCGCCGCAGAAAUAUUCGAAAGUGGCUGCAAUCGCAGCUGGAAUGGCAACAGCAGUAGCAACAAU
.....((((((.(((....(((((.....))))).(((.((((..........(....).((((((....))))))....))))...))).))))))))).. ( -34.60)
>DroAna_CAF1 41223 83 - 1
UUGUGUGUUGCAUACAAAAGGGCGCUUAACGCUCAGACCGCCGCAGCAGCGGCCGAAAGUGGCUGCAAUCGCAGCCG-------------------AACAAU
(((((((...)))))))..(((((.....))))).....(((((....)))))(....)(((((((....)))))))-------------------...... ( -33.20)
>consensus
UUGUGUGUUGCAUACAAAAGGGCGCUUAACGCUCAGCUCGCCGCAGAAAUAUUCGAAAGUGGCUGCAAUCGCAGCUGGAAUGGCAACAGCAGUAGCAACAAU
.((((.((((((.......(((((.....))))).....(((((..............)))))))))))))))((((.........))))............ (-25.97 = -26.64 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:50 2006