Locus 5298

Sequence ID 2L_DroMel_CAF1
Location 14,934,994 – 14,935,090
Length 96
Max. P 0.676379
window8423

overview

Window 3

Location 14,934,994 – 14,935,090
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -24.45
Consensus MFE -14.88
Energy contribution -14.98
Covariance contribution 0.10
Combinations/Pair 1.21
Mean z-score -1.67
Structure conservation index 0.61
SVM decision value 0.30
SVM RNA-class probability 0.676379
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14934994 96 - 22407834
GCAUUGCCCG----CCCACAUUAAAUAUUAAUGG-AGCAUGGGCGGGGCAUUUUUCAAGGCU-UCAUGUUAUUUAAUGUGCUUGUGUGU-UUUUCAUCUCUUU
((((((((((----(((((((((.....))))).-....))))).))))).......((((.-.(((........))).))))))))..-............. ( -24.50)
>DroSec_CAF1 30388 96 - 1
GCAUUGCCCG----CCCACAUUAAAUAUUAAUGG-GGCAUGGGCGGGGCAUUUUUCAAGGCU-UCAUGUUAUUUAAUGUGUUUGUGUGU-UUUUCAUCUCUUU
((.(((((((----(((.(((((.....))))))-)))..)))))).))........(.((.-.((((((....))))))...)).)..-............. ( -25.60)
>DroEre_CAF1 42740 99 - 1
GCAUUGCCCG----CCCACAUUAAAUAUUAAUGGGGGCAUGGGCGGGGCAUUUUUCAAGGCUUUCAUGUUAUUUAAUGUGUUUGUGUGUGUUUCCAUCUCGUU
.....(((((----(((.(((((.....))))).))))..))))(..((((......((((...(((........))).))))....))))..)......... ( -27.40)
>DroYak_CAF1 40186 96 - 1
GCAUUGCCCG----CCCACAUUAAAUAUUAAUGG-GGCGUGGGCGGGGCAUUUUUCAAGGCU-UCAUGUUAUUUAAUGUGUUUGUGUGU-UUUCCAUCUCUUU
((.(((((((----(((.(((((.....))))))-)))..)))))).))........(.((.-.((((((....))))))...)).)..-............. ( -25.60)
>DroAna_CAF1 40429 92 - 1
GCGAACCACG----CCCACAUUAAAUAUUAAUGG--GCAUGGGCGGG-CACUCUC--UGGUU-UCAUGUUAUUUAAUGUGUUUGUGUGU-UUUUCUUCCUUUC
..((((((((----..(((((((((((...((((--(.((.((.((.-...)).)--).)))-))))..)))))))))))..)))).))-))........... ( -24.50)
>DroPer_CAF1 47233 88 - 1
GCACACCCCACGGCCCCACAUUAAAUAUUAAUGG-GGUGGCUGCC------------CGGUU-CCAUGUUAUUUUAUGUAUUUGUCUGC-UUUUCUUUCUCAC
(((.(((...(((((((.(((((.....))))).-)).)))))..------------.))).-.((((......))))........)))-............. ( -19.10)
>consensus
GCAUUGCCCG____CCCACAUUAAAUAUUAAUGG_GGCAUGGGCGGGGCAUUUUUCAAGGCU_UCAUGUUAUUUAAUGUGUUUGUGUGU_UUUUCAUCUCUUU
................(((((((((((...((((((((.....................))))))))..)))))))))))....................... (-14.88 = -14.98 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:49 2006