| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,931,400 – 14,931,494 |
| Length | 94 |
| Max. P | 0.526192 |
| Location | 14,931,400 – 14,931,494 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -6.84 |
| Energy contribution | -7.34 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.38 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14931400 94 - 22407834 ----UGCUAAAGAAAA-UUCAAAAUUUCAAGCGGCC-AAGCCGUUAGCAUCACUUUCCGGCCAACGCACACUUGCCAUAAUGCUAAAU-----------GUAGCAUUAUAA ----(((((..((((.-.......))))..(((((.-..)))))))))).........(((............)))(((((((((...-----------.))))))))).. ( -22.80) >DroSec_CAF1 26842 94 - 1 ----UGCUAAAGAAAA-UUCAAAAUUUCAAACGGCC-AAACCUUUAGCAUGACUUUCCGGCCAACGCACACUUUCCAUAAUGCUAAAU-----------GUAGCAUUAUAA ----(((....((((.-.......))))....((((-.....................))))...)))........(((((((((...-----------.))))))))).. ( -17.90) >DroSim_CAF1 24064 94 - 1 ----UGCUAAAGAAAA-UUCAAAAUUUCCAUCGGCC-AAACCUUUAGCAUGACUUUCCGGCCAACGCACACUUGCCAUAAUGCUAAAU-----------GUAGCAUUAUAA ----((((((((....-...................-....)))))))).........(((............)))(((((((((...-----------.))))))))).. ( -18.13) >DroEre_CAF1 39201 91 - 1 -------CAGAGAAAA-UAGAAAAUUUCAAACGGCCAAAACCUCUAGCAUGACUUCUGGGCCAACGCACGC-UGCCAUAAUGUUAAAU-----------GUAGCAUUAUAA -------(((.((((.-.......))))....((((......((......))......))))........)-))..(((((((((...-----------.))))))))).. ( -16.90) >DroYak_CAF1 36708 95 - 1 ----UGCCAUAGAAAACUCGAAAAUUUCAAACGCCC-AAACCUUUAGCAUGGCUUUCCGGCCAACGCACACUUGCCAUAAUGCUAAAU-----------GUAGCAUUAUAA ----.(((((.((((.........))))....((..-.........))))))).....(((............)))(((((((((...-----------.))))))))).. ( -18.10) >DroAna_CAF1 37157 99 - 1 UAGAUUAUAAACAAUG-AUACAAAUUUCGACCAG-----AAA------UGGGCCUUGCGACUAACGCACAUUUACCAUAAGCUUAAAUACCAACUCAGGGCAGCAUUAUAA ............((((-.............(((.-----...------)))((((((((.....)))..(((((.........)))))........)))))..)))).... ( -14.50) >consensus ____UGCUAAAGAAAA_UUCAAAAUUUCAAACGGCC_AAACCUUUAGCAUGACUUUCCGGCCAACGCACACUUGCCAUAAUGCUAAAU___________GUAGCAUUAUAA ................................((((......................))))..............(((((((((...............))))))))).. ( -6.84 = -7.34 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:48 2006