Locus 5296

Sequence ID 2L_DroMel_CAF1
Location 14,928,436 – 14,928,556
Length 120
Max. P 0.612806
window8421

overview

Window 1

Location 14,928,436 – 14,928,556
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.89
Mean single sequence MFE -29.48
Consensus MFE -26.31
Energy contribution -26.25
Covariance contribution -0.05
Combinations/Pair 1.06
Mean z-score -1.21
Structure conservation index 0.89
SVM decision value 0.16
SVM RNA-class probability 0.612806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14928436 120 + 22407834
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUACAGGCCAUUCACAUUUGGAUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCGUCGUCUGUGGUCGGCACAAAGCUCAGCU
..(((((.(((((((((((.......(((((((........)))))))......)))))).........((((.(((...))).))))...))))).)))))..(((.....)))..... ( -27.72)
>DroVir_CAF1 115033 120 + 1
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUAAAGGCCGUUCACAUUUGGAUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCGUCGUCUGUGGUGGGCACAAAGCUCAGCU
....(((.(((((((((((.......(((((((........)))))))......)))))).........((((.(((...))).))))...))))).)))(.(((((.....))))).). ( -32.02)
>DroGri_CAF1 85107 120 + 1
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUAGAGGCCGUUCACAUUUGGAUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCGUCGUCUGUGGUAGGCACAAAGCUCAGUU
..(((((.(((((((((((.......((((((((......))))))))......)))))).........((((.(((...))).))))...))))).)))))..(((.....)))..... ( -30.82)
>DroWil_CAF1 29910 120 + 1
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUACAGGCCAUUCACAUUUGGAUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCGUCGUCUGUGGUCGGAACAAAGCUCAACU
..(((((.(((((((((((.......(((((((........)))))))......)))))).........((((.(((...))).))))...))))).))))).................. ( -26.42)
>DroMoj_CAF1 77612 120 + 1
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUAGAGGCCGUUCACAUUUGGAUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCGUCGUCUGUGGUGGGCACAAAGCUCAGCU
....(((.(((((((((((.......((((((((......))))))))......)))))).........((((.(((...))).))))...))))).)))(.(((((.....))))).). ( -35.42)
>DroPer_CAF1 37714 120 + 1
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUACAGGCCAUUCACAUUUGGGUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCAUCGUCUGUGGUCGGCACAAAGCUCAGCU
.........((((.............(((((((........))))))).((((..((((....))....((((.(((...))).)))).....))..))))))))((.....))...... ( -24.50)
>consensus
ACUUACAAACGACAUUCAAUUUCCACAUGGUCUCCAAAUACAGGCCAUUCACAUUUGGAUUUUCCGCACGGCAUGUUAUCGAUUUGCCAUCGUCGUCUGUGGUCGGCACAAAGCUCAGCU
..(((((.(((((((((((.......(((((((........)))))))......)))))).........((((.(((...))).))))...))))).)))))..(((.....)))..... (-26.31 = -26.25 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006