Locus 5295

Sequence ID 2L_DroMel_CAF1
Location 14,927,588 – 14,927,678
Length 90
Max. P 0.631656
window8420

overview

Window 0

Location 14,927,588 – 14,927,678
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 90.15
Mean single sequence MFE -19.03
Consensus MFE -16.47
Energy contribution -17.22
Covariance contribution 0.75
Combinations/Pair 1.07
Mean z-score -1.53
Structure conservation index 0.87
SVM decision value 0.20
SVM RNA-class probability 0.631656
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14927588 90 + 22407834
GGAGGCGUGGCAACCUCUUUCAGAUUGAAGUAAAGAAAAUAUUCAUAUUUUAAGAAAUGAAAAGCAAAGAAACGCUAUUACGUGAUGCCC
...(((((.((......(((((..((((((((..(((....))).))))))))....)))))(((........))).....)).))))). ( -19.40)
>DroSec_CAF1 23059 90 + 1
GGAGGCGUGGCAACCUCUUUCAGAUUGAAGUAAAGAAAAUAUUCAUAUUUUAAGAAAUGAAAAGCAAAGAAAUGCUAUUACGUGUUGCCC
........(((((((..(((((..((((((((..(((....))).))))))))....)))))((((......)))).....).)))))). ( -18.80)
>DroSim_CAF1 19666 90 + 1
GGAGGCGUGGCAACCUCUUUCAGAUUGAAGUAAGGAAAACAUUCAUAUUUAAAGAAAUGAAAAGCAAAGAAAUGCUAUUACGUGAUGCCC
...(((((.((......(((((..((.(((((.(((.....))).)))))...))..)))))((((......)))).....)).))))). ( -19.00)
>DroEre_CAF1 35234 90 + 1
GGAGGCGUGGCAACCUCUUUCAGAUUGAAGUAAAGAAAAUAUUCAUAUUUUAAGAAAUGAAAAGCAAGGAAAUGCUAUUACGUGAUGCCC
...(((((.((......(((((..((((((((..(((....))).))))))))....)))))((((......)))).....)).))))). ( -20.50)
>DroYak_CAF1 32802 89 + 1
GG-GGCGUGGCAACCUCUUUCAGAUUGAAGUGAAGAAAAUAUUCAUAUUUUAAGAAAUGAAAAGCAAAGAAAUGCUAUUACGUGAUGCCC
.(-(((((.((......(((((..((((((((((.......)))))..)))))....)))))((((......)))).....)).)))))) ( -22.90)
>DroAna_CAF1 33417 86 + 1
GUGAGCGUGGCU---CAAUCCGGAUUGAAGUAGCGAAAAUUUUCAUAUUUUAACAAACGAAAAGCAAAGAAAUGCCAUUACGUGAUGCC-
.(((((...)))---))(((((..((((((((..(((....))).))))))))..........(((......))).....)).)))...- ( -13.60)
>consensus
GGAGGCGUGGCAACCUCUUUCAGAUUGAAGUAAAGAAAAUAUUCAUAUUUUAAGAAAUGAAAAGCAAAGAAAUGCUAUUACGUGAUGCCC
...(((((.((......(((((..((((((((..(((....))).))))))))....)))))((((......)))).....)).))))). (-16.47 = -17.22 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:46 2006