| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,919,503 – 14,919,599 |
| Length | 96 |
| Max. P | 0.865432 |
| Location | 14,919,503 – 14,919,599 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.49 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -20.65 |
| Energy contribution | -19.77 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14919503 96 - 22407834 --------------UCUUGCCGCUUU--U--GG---UCUCUGUUUGUCGCAAAGUUUGUGGCUCGUUAAGCAAAUUCAAACGACUUAAGCGGCAACACAUGUUGGCAAACAGCGGU---C --------------..(((((((((.--.--((---((...(((((.((((.....))))(((.....))).....))))))))).)))))))))....(((((.....)))))..---. ( -29.50) >DroVir_CAF1 110642 88 - 1 ----------------------GUUC--U--AU---GCUGUGUUUGUCGCAAAGUUUGUGGCUCGUUAAGCAAAUUCAAACGACUUAAGCGGCAACACAUGUUCACAAGCAGCGCC---A ----------------------....--.--..---((((((((((((((...(((((..(((.....))).....))))).......))))))).)).((....)).)))))...---. ( -21.40) >DroPse_CAF1 26968 96 - 1 --------------CCUUUCUGCUGU--U--GC---UUUCUGUUUGUCGCAAAGUUUGUGGCUCGUUAAGCAAAUUCAAACGACUUAAGCGGCAACACAUGUUGGCAAACAGCGGU---C --------------.....(((((((--(--((---(..(((((((((((...(((((..(((.....))).....))))).......))))))).))).)..))).)))))))).---. ( -31.80) >DroGri_CAF1 80944 90 - 1 ----------------------GUCC--UGUGU---GCUGUGUUUGUCGCAAAGUUUGUGGCUCGUUAAGCAAAUUCAAACGACUUAAGCGGCAACACAUGUUCACAAGCAACGCC---A ----------------------((..--((((.---((((((((.(((((...(((((..(((.....))).....))))).......))))))))))).)).)))).))......---. ( -25.60) >DroWil_CAF1 18510 104 - 1 --------------CCUUUUUACUGUUUU--GCCUUCUUCUGUUUGUCGCAAAGUUUGUGGCUCGUUAAGCAAAUUCAAACGACUUAAGCGGCAACACAUGUUGGCAAACAGCAGCGGUC --------------.....(..(((((((--(((..(...((((((((((...(((((..(((.....))).....))))).......))))))).))).)..))))))..))))..).. ( -26.50) >DroAna_CAF1 24998 113 - 1 CCGGAUCCGGUUAGCCUUGUCGCUGU--U--GG---UCUCUGUUUGUUGCAAAGUUUGUGGCUCGUUAAGCAAAUUCGAACGACUUAAGCGGCAACACAUGUUGGCAAACAGCGGUCGUC (((....)))........((((((((--(--.(---((..(((.((((((...(((((.((.(((((...........)))))))))))).)))))).)))..))).)))))))).)... ( -34.30) >consensus ______________CCUU___GCUGU__U__GC___UCUCUGUUUGUCGCAAAGUUUGUGGCUCGUUAAGCAAAUUCAAACGACUUAAGCGGCAACACAUGUUGGCAAACAGCGGC___C ....................................((.((((((((((((..(((((..(((.....))).....))))).......(.(....).).)).)))))))))).))..... (-20.65 = -19.77 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:44 2006