Locus 5293

Sequence ID 2L_DroMel_CAF1
Location 14,916,520 – 14,916,610
Length 90
Max. P 0.511662
window8418

overview

Window 8

Location 14,916,520 – 14,916,610
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 87.15
Mean single sequence MFE -20.28
Consensus MFE -14.39
Energy contribution -15.39
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.71
SVM decision value -0.04
SVM RNA-class probability 0.511662
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14916520 90 + 22407834
UUAUGCCUGUAAUGCCUCGACUUAGGCGCAUCAUCCAAGUUAUGCUGACUUGUUCAACUGACUUGGAAAUGCGCUCAUGUGGCUCAAUCA
.............(((.((.....(((((((..(((((((((.(.(((.....))).)))))))))).)))))))..)).)))....... ( -27.00)
>DroSec_CAF1 12054 84 + 1
UUAUGCCUGUAAUGCCUCAACUUAGGCUCAUCAUCCAAGUUAUGC------GUUCAACUGACUUGGAACUGCGCUCAUGUGGCUCAAUCA
....(((.(((..((((......))))......(((((((((...------.......)))))))))..)))((....)))))....... ( -19.20)
>DroSim_CAF1 7855 84 + 1
UUAUGCCUGUAAUGCCUCAACUUAGGCUCAUCAUCCAAGUUAUGC------GUUCAACUGACUUGGAACUGCGCUCAUGUGGCUCAAUCA
....(((.(((..((((......))))......(((((((((...------.......)))))))))..)))((....)))))....... ( -19.20)
>DroEre_CAF1 24180 73 + 1
UUAUGCCUGUAGUGCCU-----------CAUCAUCCAAGUUAUGC------AUUCAACUGACUUGGAACUGCGCUCAUGUGGCUCAAUCA
....(((((.(((((..-----------.....(((((((((...------.......)))))))))...)))))))...)))....... ( -18.20)
>DroYak_CAF1 21198 84 + 1
UUAUUCCUGUAAUGCCUAGACUAAGGCUGAUCAUCCAAGUUACGC------AUUCAACUGACUUGGAACUGCGCUCAUGAGGCUCAAUCA
.............((((......)))).(((..(((((((((...------.......)))))))))..((.(((.....))).))))). ( -17.80)
>consensus
UUAUGCCUGUAAUGCCUCAACUUAGGCUCAUCAUCCAAGUUAUGC______GUUCAACUGACUUGGAACUGCGCUCAUGUGGCUCAAUCA
....(((......((((......))))......(((((((((................))))))))).............)))....... (-14.39 = -15.39 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:43 2006