| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,916,182 – 14,916,275 |
| Length | 93 |
| Max. P | 0.940440 |
| Location | 14,916,182 – 14,916,275 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.23 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -17.68 |
| Energy contribution | -17.47 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.940440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14916182 93 + 22407834 AACUUUGGUAUUACACA--UUU--G-AGGGGCGGGUAAAGUGUGUGAAGUGAUUACUCAGUCGCUUUGCUAAUUAAGCCGCACUUGAAUGGCU-AAAGG ..(((((((......((--((.--.-((..((((.(.((....(..((((((((....))))))))..)...)).).)))).))..)))))))-)))). ( -32.70) >DroSec_CAF1 11746 77 + 1 AACUUUG---------------------GGGUGGGUAAAGUGUGUGAAGUGAUUACUCAGUCGCUUUGCUAAUUAAGCCGCACUUGAAUGACU-GAAGG ..(((..---------------------(........(((((((.(((((((((....)))))))))(((.....))))))))))......).-.))). ( -22.34) >DroSim_CAF1 7517 93 + 1 AACUUUGGUAUUACACA--UUU--A-AGGGGUGGGUAAAGUGUGUGAAGUGAUUACUCAGUCGCUUUGCUAAUUAAGCCGCACUUGAAUGGCU-GAAGG ..(((..((......((--(((--(-((..((((.(.((....(..((((((((....))))))))..)...)).).)))).)))))))))).-.))). ( -30.60) >DroEre_CAF1 23878 95 + 1 AACUUUGGUAUUAUACAUAUUU--A-AAGGGUGGGCAAAGUGUGUGAAGUGAUUACUCAGUCGCUUUGCUAAUUAAGCCGCACUUGAAUGGCU-GAAGG ..(((..((........(((((--(-...(((((((..(((..(..((((((((....))))))))..)..)))..))).)))))))))))).-.))). ( -26.80) >DroYak_CAF1 20905 93 + 1 AACUUUCGUAUUAUACA--UUU--A-AAGAGUGGGCAAAGUGUGUGAAGUGAUUACUCAGUCGCUUCGCUAAUUAAGCCGCACUUGAAUGGCU-GAAGG ..((((((.......((--(((--.-..((((((((..(((..(((((((((((....)))))))))))..)))..))).))))))))))..)-))))) ( -28.90) >DroAna_CAF1 21468 96 + 1 GACUUAAAUAUUAUGUA--UUUUGGAUAGAAUGGG-GAAGAAUGCGGAAUGAUUGCUUGUUCGCUUUGCUAAUUAAGCAGUACUUGAGCGGCGUUUUGG ..(((...((((.(((.--......))).))))..-.)))....(((((((.(((((((...(..(((((.....)))))..).)))))))))))))). ( -16.90) >consensus AACUUUGGUAUUAUACA__UUU__A_AAGGGUGGGUAAAGUGUGUGAAGUGAUUACUCAGUCGCUUUGCUAAUUAAGCCGCACUUGAAUGGCU_GAAGG .............................(((.(...(((((((.(((((((((....)))))))))(((.....))))))))))...).)))...... (-17.68 = -17.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:42 2006