Locus 5290

Sequence ID 2L_DroMel_CAF1
Location 14,903,297 – 14,903,410
Length 113
Max. P 0.600099
window8414

overview

Window 4

Location 14,903,297 – 14,903,410
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -24.20
Consensus MFE -22.07
Energy contribution -22.82
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.91
SVM decision value 0.13
SVM RNA-class probability 0.600099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14903297 113 - 22407834
UUAAUUAAUUAUUUGCACAACCCUGUGCGGUGGGAACUUAUUUGUUUGAAAUCUAAUUUGGAAGUUGAAACCAACAUGGUUGGU-------UUUCAUUUUAAUUUCACUUUUUUGUGGAU
..............(((((....)))))(((..((((......))))...))).......(((((.(((((((((...))))))-------))).)))))...(((((......))))). ( -24.40)
>DroSec_CAF1 61043 113 - 1
UUAAUUAAUUAUUUGCAAAACCCUGUGCGGUGGGAACUUAUUUGUUUGAAAUCUAAUUUGGAAGUUGAAACCAACAUGGUUGGU-------UUUCAUUUUAAUUUCACUUUUUUGUGGAU
..........(((..((((((((........)))............((((((........(((((.(((((((((...))))))-------))).))))).))))))...)))))..))) ( -23.50)
>DroSim_CAF1 63742 113 - 1
UUAAUUAAUUAUUUGCAAAACCCUGUGCGGUGGGAACUUAUUUGUUUGAAAUCUAAUUUGGAAGUUGAAACCAACAUGGUUGGU-------UUUCAUUUUAAUUUCACUUUUUUGUGGAU
..........(((..((((((((........)))............((((((........(((((.(((((((((...))))))-------))).))))).))))))...)))))..))) ( -23.50)
>DroYak_CAF1 60562 119 - 1
UUAAUUAAUUAUUUGCA-AACCCUGUGCGGUGGGAACUUAUUUGUUUGAAAUCUAAUUUGGAAGUUAAAACCCACAUGGUUGGUUUUUAGUUUUCAUUUUAAUUUCACUUUUUUGUGGAU
..........(((..((-(((((........)))............((((((.(((..(((((..(((((.(((......))).)))))..)))))..)))))))))....))))..))) ( -25.40)
>consensus
UUAAUUAAUUAUUUGCAAAACCCUGUGCGGUGGGAACUUAUUUGUUUGAAAUCUAAUUUGGAAGUUGAAACCAACAUGGUUGGU_______UUUCAUUUUAAUUUCACUUUUUUGUGGAU
..........(((..((((((((........)))............((((((.(((..(((((......((((((...)))))).......)))))..)))))))))...)))))..))) (-22.07 = -22.82 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:39 2006