Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,903,114 – 14,903,229 |
Length | 115 |
Max. P | 0.778159 |
Location | 14,903,114 – 14,903,229 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.66 |
Mean single sequence MFE | -26.36 |
Consensus MFE | -19.48 |
Energy contribution | -19.52 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.20 |
Mean z-score | -2.01 |
Structure conservation index | 0.74 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14903114 115 - 22407834 GGAGGU-UCAGCCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C .((((.-..(((((((....))))(((((--.(((((..................(....)....-..(....)))))).)))))......................)))))))....-. ( -28.60) >DroSec_CAF1 60860 115 - 1 GGAGGU-UCAACCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C .((((.-.((..((((....))))(((((--.(((((..................(....)....-..(....)))))).))))).....................))..))))....-. ( -28.40) >DroSim_CAF1 63559 115 - 1 GGAGGU-GCAACCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C .((((.-(((..((((....))))(((((--.(((((..................(....)....-..(....)))))).))))).....................))).))))....-. ( -32.40) >DroWil_CAF1 238944 120 - 1 GAAUUUUGUUACCCAUCUCAGUGGCUGGUCAAGAGUAACCACAAUACCCAACACCCGCAAGACAAAACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUUCCCCUUCUG ((((((((((...(((....)))((.(((...(.(((.......))).)...))).))..))))))).(((.........))).................)))................. ( -12.30) >DroYak_CAF1 60368 115 - 1 GGAGCU-UCAACCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C (((((.-.....((((....))))(((((--.(((((..................(....)....-..(....)))))).)))))......................)))))......-. ( -30.10) >consensus GGAGGU_UCAACCCGUUCCUGCGGUUCGC__AUGGCAACCACAAUUCCCAACACCCGCAAGACAA_ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC_C ((((........((((....))))(((((...(((((..................(....).......(....)))))).))))).......................))))........ (-19.48 = -19.52 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:38 2006