Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,900,474 – 14,900,577 |
Length | 103 |
Max. P | 0.505193 |
Location | 14,900,474 – 14,900,577 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -22.64 |
Energy contribution | -24.38 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.59 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14900474 103 - 22407834 AAGGCGUCCCAGUGGGUGGCGGUGGUCCUC-----------------CCACUGGCGAAGCCAUAAAUCUCAGCCUACACUUUCAACUUGACCCCAACGGAGUCGACUCGAUGUCGUUGGG ..(((.((((((((((.(((....).)).)-----------------))))))).)).)))..............................(((((((..((((...))))..))))))) ( -41.90) >DroSec_CAF1 58081 92 - 1 AAG-----------GGUGGCGCUGGUCCCC-----------------GCACUGGCGAAGCCAUAAAUCUCAGCCUACAUUUUCAACUUGACCCCAACGGAGUCGACUCGAUGUCGUUGGG ...-----------(((..(((..((....-----------------..))..)))..)))..............................(((((((..((((...))))..))))))) ( -29.60) >DroSim_CAF1 60920 103 - 1 AAGGCGUCCCAGUGGGUGGCGCUGGUCCUC-----------------CCACUGGCGAAGCCAUAAAUCUCAGCCUACACUUUCAACUUGACCCCAACGGAGUCGACUCGAUGUCGUUGGG ..(((.((((((((((.(((....).)).)-----------------))))))).)).)))..............................(((((((..((((...))))..))))))) ( -41.90) >DroYak_CAF1 57716 120 - 1 AAGGCGUCCCAGUGGGUGGCGCUGCUCCUCCUCCUGCCUCCUCCUGGCCACUGGAGCAGCCAUAAAUUUCAGCCUACACUUUCAACUUGACCCCAACAGAGUCGACUCGAUGUCGUUGGA .(((((((((....)).)))((((((((.......(((.......)))....))))))))...........)))).....((((((..((((......).)))(((.....))))))))) ( -39.50) >consensus AAGGCGUCCCAGUGGGUGGCGCUGGUCCUC_________________CCACUGGCGAAGCCAUAAAUCUCAGCCUACACUUUCAACUUGACCCCAACGGAGUCGACUCGAUGUCGUUGGG .((((.........(((..(((((((.......................)))))))..)))..........))))................((((((((.((((...)))).)))))))) (-22.64 = -24.38 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:34 2006