Locus 5283

Sequence ID 2L_DroMel_CAF1
Location 14,897,108 – 14,897,211
Length 103
Max. P 0.500000
window8403

overview

Window 3

Location 14,897,108 – 14,897,211
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.62
Mean single sequence MFE -29.45
Consensus MFE -22.75
Energy contribution -23.34
Covariance contribution 0.58
Combinations/Pair 1.15
Mean z-score -1.16
Structure conservation index 0.77
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14897108 103 + 22407834
---UGU-------GGUAGUUGGUGGCUUGUUGCCUUCUGUUAUUGUUAUGGCUAGUGUUGCUUACAGCUUCGCGCUGUCCAUAAUAAAGCAAACAUAUGACAAGCAAGCAACG-------
---...-------....((((.(.(((((((......((((.(((((((((.((((((.((.....))...)))))).))))))))))))).......))))))).).)))).------- ( -33.82)
>DroPse_CAF1 114967 113 + 1
GUCGUC-------GGUCGUCAGUUGUUUGUAGCUCGUUCUUAUUGUUAUGGCUAGUGUUUCUUACGGCUUCAUGUUGUCCAUAAUAAAGCAAACAUAUGACAAGCCAGAAACAAGAAAGG
......-------(((.((((..(((((((((......))..(((((((((............(((((.....)))))))))))))).)))))))..))))..))).............. ( -22.80)
>DroSec_CAF1 54787 103 + 1
---UGU-------GGUAGUUGGUGGCUUGUUGCCUUCUGUUAUUGUUAUGGCUAGUGUUGCUUACAGCUUCGCGCUGUCCAUAAUAAAGCAAACAUAUGACAAGCAAGCAACG-------
---...-------....((((.(.(((((((......((((.(((((((((.((((((.((.....))...)))))).))))))))))))).......))))))).).)))).------- ( -33.82)
>DroSim_CAF1 54663 103 + 1
---UGU-------GGUAGUUGGUGGCUUGUUUCCUUCUGUUAUUGUUAUGGCUAGUGUUGCUUACAGCUUCGCGCUGUCCAUAAUAAAGCAAACAUAUGACAAGCAGGCAACG-------
---...-------....((((.(.(((((((......((((.(((((((((.((((((.((.....))...)))))).))))))))))))).......))))))).).)))).------- ( -34.52)
>DroYak_CAF1 54317 103 + 1
---AGC-------GGUAGUUGGUGGCUUGUUGCCUUCUGUUAUUGUUAUGGCUAGUGUUGCUUACAGCUUCGUGUUGUCCAUAAUAAAGCAAACAUAUGACAAGCAAGCAACG-------
---...-------....((((.(.(((((((......((((.(((((((((.(((..(.((.....))...)..))).))))))))))))).......))))))).).)))).------- ( -28.02)
>DroPer_CAF1 97555 120 + 1
GUCGUCGGUCGUCGGUCGUCAGUUGUUUGUAGCUCGUUCUUAUUGUUAUGGCUAGUGUUUCUUACGGCUUCAUGUUGUCCAUAAUAAAGCAAACAUAUGACAAGCCAGAAACAAGAAAGG
....((.....(((((.((((..(((((((((......))..(((((((((............(((((.....)))))))))))))).)))))))..))))..))).)).....)).... ( -23.70)
>consensus
___UGC_______GGUAGUUGGUGGCUUGUUGCCUUCUGUUAUUGUUAUGGCUAGUGUUGCUUACAGCUUCGCGCUGUCCAUAAUAAAGCAAACAUAUGACAAGCAAGCAACG_______
.................((((.(.(((((((......((((.(((((((((.((((((.((.....))...)))))).))))))))))))).......))))))).).))))........ (-22.75 = -23.34 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:28 2006