Locus 5282

Sequence ID 2L_DroMel_CAF1
Location 14,895,694 – 14,895,804
Length 110
Max. P 0.682789
window8402

overview

Window 2

Location 14,895,694 – 14,895,804
Length 110
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 91.59
Mean single sequence MFE -35.92
Consensus MFE -30.83
Energy contribution -30.95
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.55
Structure conservation index 0.86
SVM decision value 0.31
SVM RNA-class probability 0.682789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14895694 110 - 22407834
AGUGGAUGGUGGGUGGAUGGGACGAUUGCGGAUUGAGGGUUCGGUGGGUCGGUUGUUGGCAAGACAACUUAUCG------CUGUAGUUGUUGUAGUUGCCCAUUCAAUUAAUAUAC
......(((((((..(.((.(((((((((((((((......)))).(((.(((((((.....))))))).))).------))))))))))).)).)..)))).))).......... ( -35.50)
>DroSec_CAF1 53369 110 - 1
AGUGGAUGGUGGGCGGAUGGGGCGAUUGCGGAUUGAGGGUUCGGUGGGUCGGUGGUUGGCAAGACAACUUAGCG------CUGUAGUUGUUGCAGUUCCCCAUUCAAUUAAUAUAC
..(((((((.(((....((.(((((((((((.(((((.(((..((.(..(...)..).))..)))..)))))..------))))))))))).))..)))))))))).......... ( -33.80)
>DroSim_CAF1 53225 110 - 1
AGUGGAUGGCGGGCGGAUGGGGCGAUUGCGGAUUGAGGGUUCGGUGGGUCGGUGGUUGGCAAGACAACUUAGCG------CUGUAGUUGUUGCAGUUCCCCAUUCAAUUAAUAUAC
..(((((((.(((....((.(((((((((((.(((((.(((..((.(..(...)..).))..)))..)))))..------))))))))))).))..)))))))))).......... ( -33.80)
>DroYak_CAF1 52872 115 - 1
AGUGGAUGGUGGGCGGAUGGGGCGAUUGCAGAUUGAG-GUUCGGUAGGUCGGUGGUUGGCAAGACAACUUACCGCUCUGGCUGUAGUUGUUGUAGUUCUCCAUUCAAUUAAUUUAC
..(((((((.((((...((.(((((((((((...(((-...((((((((.(.((.....))...).)))))))))))...))))))))))).)))))).))))))).......... ( -40.60)
>consensus
AGUGGAUGGUGGGCGGAUGGGGCGAUUGCGGAUUGAGGGUUCGGUGGGUCGGUGGUUGGCAAGACAACUUAGCG______CUGUAGUUGUUGCAGUUCCCCAUUCAAUUAAUAUAC
..(((((((.(((....((.(((((((((((((((......))))....(((((((((......)))).)))))......))))))))))).))..)))))))))).......... (-30.83 = -30.95 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:27 2006