Locus 5281

Sequence ID 2L_DroMel_CAF1
Location 14,895,046 – 14,895,141
Length 95
Max. P 0.828334
window8401

overview

Window 1

Location 14,895,046 – 14,895,141
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.02
Mean single sequence MFE -33.60
Consensus MFE -20.04
Energy contribution -19.41
Covariance contribution -0.64
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 0.71
SVM RNA-class probability 0.828334
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14895046 95 - 22407834
--GACUCAGUCGCUGUGAAGGACAUUUGGCAA------CGCUUUUGGCCGAG--AGUC--------------UGACUGUGUCGUUUUGC-UGGAUUUAUUUCACGGCACAUUUAAUUUCA
--(((...)))(((((((((...(((..((((------(((..(..(.(...--.).)--------------..)..)))).....)))-..)))...)))))))))............. ( -28.70)
>DroPse_CAF1 111064 116 - 1
GGGAUUCAUCCGCUGUGAAGGACAUUUGGCAGGCAGCGUGUUUUUGGCCAAA--AGUCUCUGACUGUGGCUCUGGCUGUGUCGU--UUCUUGGAUUUAUUUCACGGCACAUUUAAUUCCA
((((((.....((((((((((((.((((((.(((.....)))....))))))--.))))..(((.(..((....))..))))..--.............))))))))......)))))). ( -35.40)
>DroSec_CAF1 52739 93 - 1
--GACUCAGUCGCUGUGAAGGACAUUUGGCAG------CGCUUUUGGCCGAG--AGUC--------------UGACUGUGUCAU--UGC-CGGAUUUAUUUCACGGCACAUUUAAUUUCA
--(((.((((((((((.(((....))).))))------)((((((....)))--))).--------------.))))).)))..--(((-((((......)).)))))............ ( -34.10)
>DroSim_CAF1 52586 93 - 1
--GACUCAGUCGCUGUGAAGGACAUUUGGCAG------CGCUUUUGGCCGAG--AGUC--------------UGACUGCGUCGU--UGC-CGGAUUUAUUUCACGGCACAUUUAAUUUCA
--(((.((((((((((.(((....))).))))------)((((((....)))--))).--------------.))))).)))((--.((-((((......)).))))))........... ( -34.00)
>DroYak_CAF1 52226 95 - 1
--GACUCAGUGGCUGUGAAGGACAUUUGGCAG------UGCUUUUGGCCGAGAGAGCC--------------UGACUCUGUCGU--UGC-UGGAUUUAUUUCACGGCACAUUUAAUUUCA
--.....(((((((((((((...(((..((((------.((.....))(((.((((..--------------...)))).))))--)))-..)))...))))))))).))))........ ( -32.60)
>DroPer_CAF1 93695 116 - 1
GGGAUUCAUCCGCUGUGAAGGACAUUUGGCAGGCAGCGUGUUUUUGGCCAAA--AGUCUCUGACUGUGGCUCUGGCUGUGUCGU--UCCUUGGAUUUAUUUCACGGCACAUUUAAUUCCA
((((((.....((((((((((((((..(.(((((.(((.(((...(((....--.)))...)))))).)).))).).)))))..--((....))....)))))))))......)))))). ( -36.80)
>consensus
__GACUCAGUCGCUGUGAAGGACAUUUGGCAG______CGCUUUUGGCCGAG__AGUC______________UGACUGUGUCGU__UGC_UGGAUUUAUUUCACGGCACAUUUAAUUUCA
...........((((((((((((.((((((................))))))...)))..............((((...))))...............)))))))))............. (-20.04 = -19.41 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:26 2006