| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,883,271 – 14,883,368 |
| Length | 97 |
| Max. P | 0.637126 |
| Location | 14,883,271 – 14,883,368 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.19 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -21.78 |
| Energy contribution | -22.12 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14883271 97 - 22407834 ---GGCAUUGCUGCCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGCAAAUGGAAACAAG-AAUUCA------------------- ---....((((((..(((((((((.((((..(((.((....)))))((((....))))...)))).))))).)))).)))))).((....))..-......------------------- ( -27.00) >DroPse_CAF1 95651 120 - 1 ACGAGUAUUGCUGUCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGCAAAUGGAAGGCAGCGGUGGAACCCGCAGCAGGAGCAGCA .......(((((((.(((((((((.((((..(((.((....)))))((((....))))...)))).))))).))))))))))).......((.((((......)))).((....)).)). ( -36.90) >DroEre_CAF1 40894 97 - 1 ---GGCAUUGCUGCCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGCAAAUGGAAACAGG-AAUAUA------------------- ---....((((((..(((((((((.((((..(((.((....)))))((((....))))...)))).))))).)))).)))))).((....))..-......------------------- ( -27.00) >DroYak_CAF1 40808 97 - 1 ---GGCAUUGCUGCCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGCAAAUGGAAACAGG-AAUACA------------------- ---....((((((..(((((((((.((((..(((.((....)))))((((....))))...)))).))))).)))).)))))).((....))..-......------------------- ( -27.00) >DroAna_CAF1 44016 97 - 1 ---AGCAUUGCCGCCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGAAAAUGGAGGCAAG-AGUACA------------------- ---.((.(((((...(((((((((.((((..(((.((....)))))((((....))))...)))).))))).)))).((.....))..))))).-.))...------------------- ( -24.60) >DroPer_CAF1 78242 120 - 1 ACGAGUAUUGCUGUCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGCAAAUGGAAGGCAGCGGUGGAACCCGCAGCAGGAGCAGCA .......(((((((.(((((((((.((((..(((.((....)))))((((....))))...)))).))))).))))))))))).......((.((((......)))).((....)).)). ( -36.90) >consensus ___AGCAUUGCUGCCGGCAAUUUGUUGACUUGACUGCAAAUGUGUCGCAUCUUAAUGCGCUGUUAUUAAAUAUGCCACAGCAAAUGGAAACAAG_AAUACA___________________ .......((((((..(((((((((.((((..(((.((....)))))((((....))))...)))).))))).)))).))))))..................................... (-21.78 = -22.12 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:22 2006